LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc30734g00003	ATGACTCCACAAAATTCATCCTGTGTCCTGCAGTCAAAGAATGATTACCAAGAACCAGATGAAGAGAACAATGCCCAAGGGTGGAACATCAAAATGTCTAGATGGGCTTCTGATGGTCAATCACCGGTGGGTGATGTTGATGAATTTAAATCTGGCAAATTGAAGTCAAGTCCTGAGATTGGTGAATTTCAAAGAGAATGTTCAGAAAGCACAATCACGAGATCCTCAGGAAGCAACGGACTAGATAATAGTGGGGGCCGTTTTGACGATAGTGATTCTGAAAAGGAGTTCTCTACGGACTCCATGGTTGATGCTGAGGAACAGAGTGATGTTGGTGATTATGCATCTGATTCTGATGAAGATGCTGGTTTAATGAACACACACAGAAATATAAACATGCTTCAGAGTTGTAGAAGTGTGTGCGAGTTTGAGATGATTAAGAAAATCAATGAAGGAACTTACGGTGTTGTCTACAAGGCTAGGGATAAGAAGACTGGAGAAATAGTAGCATTGAAGAAGGTGAAGATGAATATAGAAAGGGATGGCTTCCCATTGTCATCCTTGAGGGAAATTAACATACTCTTGTCTTTCGATCACCCCTCCATTGTGGATGTGAAAGAAATAGTTGTGGATAATTATGATGGTACTTTCATGGTGATGGAGTACATGGAGCATGACCTTAAGGGGCTGATGGAGGCAAAGAAGCAGCCCTTCAGTATGGGTGAAATAAAATCTTTGATGCTGCAACTTCTTGAAGGTGTCAAGTATCTCCATGACAATTGGGTTCTCCATAGGGACTTAAAGACATCAAACATTCTGCTGAACGACAAGGGGGAGCTGAAAATATGTGACTTTGGGTTGTCCCGGCAGTTCGGGAGCCCACTAAAGCCATATACTCCTATTGTCGTGACACTATGGTACAGGGCTCCGGAGCTTTTGTTAGGAGCTAAAGAATATTCAACTGCGATTGACATGTGGTCGGTGGGTTGCATAATGGCCGAGTTGGTTGCCAAGGAACCTCTGTTCACGGGTAGAACAGAACTTGAACAAATTGACAAGATTTTTAGGACCCTGGGTACACCTGATGAGAAAATTTGGCCGGGATTATCCAAATTACCTGGTCCTAAAGCAAAATTTGTTAAACAACCATATAATATGCTAAGGAAAAAATTTCCAGCCACATCTTTTACTGGTTCACCAGTTCTATCTGAGCTAGGATTTGACTTGTTGAAGAAGCTTCTAACTTACAATCCAGAAGAGAGGATAAGTGCAGAAGAGGCCCTTCTTCATGATTGGTTCCATGAAGTCCCCCTTCCAAAATATGATTTCAAGCCTATTTTCCCTTCTTTTCGTGGCTAG	1359	0.4202	MTPQNSSCVLQSKNDYQEPDEENNAQGWNIKMSRWASDGQSPVGDVDEFKSGKLKSSPEIGEFQRECSESTITRSSGSNGLDNSGGRFDDSDSEKEFSTDSMVDAEEQSDVGDYASDSDEDAGLMNTHRNINMLQSCRSVCEFEMIKKINEGTYGVVYKARDKKTGEIVALKKVKMNIERDGFPLSSLREINILLSFDHPSIVDVKEIVVDNYDGTFMVMEYMEHDLKGLMEAKKQPFSMGEIKSLMLQLLEGVKYLHDNWVLHRDLKTSNILLNDKGELKICDFGLSRQFGSPLKPYTPIVVTLWYRAPELLLGAKEYSTAIDMWSVGCIMAELVAKEPLFTGRTELEQIDKIFRTLGTPDEKIWPGLSKLPGPKAKFVKQPYNMLRKKFPATSFTGSPVLSELGFDLLKKLLTYNPEERISAEEALLHDWFHEVPLPKYDFKPIFPSFRG	452

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Stsc30734g00003	452	MobiDBLite	consensus disorder prediction	87	102	-	-
	Stsc30734g00003	452	CDD	STKc_CDC2L1	137	433	IPR045267	GO:0004674\|GO:0005524\|GO:0006468
	Stsc30734g00003	452	Pfam	Protein kinase domain	143	433	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Stsc30734g00003	452	Gene3D	Transferase(Phosphotransferase) domain 1	225	443	-	-
	Stsc30734g00003	452	Gene3D	Phosphorylase Kinase; domain 1	125	224	-	-
	Stsc30734g00003	452	SUPERFAMILY	Protein kinase-like (PK-like)	137	439	IPR011009	-
	Stsc30734g00003	452	FunFam	Cyclin-dependent kinase G-2	225	452	-	-
	Stsc30734g00003	452	MobiDBLite	consensus disorder prediction	21	36	-	-
	Stsc30734g00003	452	FunFam	cyclin-dependent kinase G-2 isoform X1	128	224	-	-
	Stsc30734g00003	452	ProSiteProfiles	Protein kinase domain profile.	143	433	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Stsc30734g00003	452	MobiDBLite	consensus disorder prediction	48	62	-	-
	Stsc30734g00003	452	PANTHER	CELL DIVISION PROTEIN KINASE	142	439	-	-
	Stsc30734g00003	452	SMART	serkin_6	143	433	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Stsc30734g00003	452	MobiDBLite	consensus disorder prediction	1	120	-	-
	Stsc30734g00003	452	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	262	274	IPR008271	GO:0004672\|GO:0006468
	Stsc30734g00003	452	MobiDBLite	consensus disorder prediction	63	86	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc30734g00003	Stsc-Chr30734	5597	9043	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc30734g00003	138	439	Core Cell Cycle Gene Families	AT5G10270	45.912	1.34e-85	269

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CMGC_CDK-PITSLRE	Stsc30734g00003		Pkinase	2.1e-73	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc30734g00003	K08818		-	gmx:100814438	691.034