Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30733g00004 ATGGTGAGGGGAAAGATTGAGATGAAAAGAATAGAGAATGCAACAAGCCGTCAAGTAACGTTTTCAAAGCGGAGGAATGGGCTTCTAAAGAAAGCACATGAGCTATCTGTTCTTTGTGATGCACAAATTGCTCTTATAATCTTCTCACAAAGTGGCAGACTCTTTGAATACTCAAGTACTTCAGACGTGCAACAAATTTTGGAACGCTACCGTCAATATGTAGCCAATGATGATCGTATCAATAATATTGGAGACATCCAGCAATTGGAATTTGACCACTCAAACTTGGCTAAGCAGATTGAGTTTCTTGAGATTTCTCAAAGGAAGCTAATGGGACAGGGCTTGAGCTCTTGTTCATATGATGAACTTGTTGGAATTGAGAATCAGCTTGTCTCAAGTTTGCAAAACATCAGGCTCAAAAAGGCTCAGCTTTATAGAGAGCATATTGAACAACTACAAAATAAGGAGAAAGATTTGCTCCTAGAGATAGAGAATGCCAAATTAACTGAAATGTGTGGGAGAAGAAAAGGTTCAGAAGAAGAGCAACAATGGGGTAATAAACAGAGAGAAGCATCAGCATTATCCCCCAGTCCAAGTAACCAAAGCTCTGATCTTGTGGAGACTGAATTGTTCATTGGACTTCCTGAATGGCGTTAG 657 0.3973 MVRGKIEMKRIENATSRQVTFSKRRNGLLKKAHELSVLCDAQIALIIFSQSGRLFEYSSTSDVQQILERYRQYVANDDRINNIGDIQQLEFDHSNLAKQIEFLEISQRKLMGQGLSSCSYDELVGIENQLVSSLQNIRLKKAQLYREHIEQLQNKEKDLLLEIENAKLTEMCGRRKGSEEEQQWGNKQREASALSPSPSNQSSDLVETELFIGLPEWR 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30733g00004 218 Gene3D - 14 78 IPR036879 GO:0003677|GO:0046983
Stsc30733g00004 218 FunFam MADS-box transcription factor MADS-MC 13 84 - -
Stsc30733g00004 218 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Stsc30733g00004 218 SUPERFAMILY SRF-like 3 81 IPR036879 GO:0003677|GO:0046983
Stsc30733g00004 218 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Stsc30733g00004 218 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Stsc30733g00004 218 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Stsc30733g00004 218 CDD MADS_MEF2_like 3 77 IPR033896 GO:0000977|GO:0045944
Stsc30733g00004 218 MobiDBLite consensus disorder prediction 187 207 - -
Stsc30733g00004 218 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Stsc30733g00004 218 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 186 - -
Stsc30733g00004 218 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Stsc30733g00004 218 Pfam K-box region 87 172 IPR002487 GO:0003700|GO:0005634|GO:0006355
Stsc30733g00004 218 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Stsc30733g00004 218 Coils Coil 142 169 - -
Stsc30733g00004 218 ProSiteProfiles K-box domain profile. 86 183 IPR002487 GO:0003700|GO:0005634|GO:0006355
Stsc30733g00004 218 MobiDBLite consensus disorder prediction 173 207 - -
Stsc30733g00004 218 Coils Coil 86 106 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30733g00004 Stsc-Chr30733 29132 36252 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30733g00004 1 214 MADS-box Gene Family AT5G51860 47.032 1.59e-55 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Stsc30733g00004 K-box 4.3e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30733g00004 - - aip:107642209 336.265