Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30730g00001 ATGCATGTTCCAGAAGTGCAAATTGAAGGTCCACCTGATACGTATCCGTTGTTGATGGAGCGGCTGGGCAGCTTGAACAGCAATCAGCATACGATTGAGCAGCCAGAGAGCTTGAATGGCAATCAGCATATCATAGACATTAACGTGGCTGGAAGCAGTGATGCTTCCACTTCAGGATCTGCTCATGATAGACATTCTAATGGTGTAAATACATCACAGGATGTAGAGAGAGCTGGTAGTGTGAGAGTACCTGTTTCCCACCCTTCGGTTTTATCCAACAATGGATCAAATTCCAGGAATTCTTCGTTCATCAGACGTGGAGATTCACGCCGGAGTAGGAGTCCTGTGCATTCAGGGCTGTGGATATCTGTAGAGCTAGTACTCTTATTAAGCCAAATCGTTGCATCAATTGTTGTATTGTCTTTGTCAAGGCACGAGCATCCACATGCCCCATTGTTTCCGTGGATTGTGGGTTATGCAAGTGGATGTGTTGCTACGCTACCACTGCTTTATTGGAGGTATTATCATCATAACCAAAGTCGGGATCAAGATTCATCTCAGACACGTCAATCATCTCCTCGGGTTAATGATCCTTCCGGGACATTTCATTCCAGTTCCAGAACTAATGGAGGAGCAGATGGCCATGCTGCTGCTTCAATACCCAGAAGCAGTCAAGCTTCACCATTGACGAACAGAAGAATGAAGACACTAGTGGAATACTTCAAAATATCTTTAGATTGCTTTTTTGCTATATGGTTTGTTGTTGGAAATGTATGGATCTTTGGAGGACATTCGTCTCCTGAAGAAGCTCCTAACTTGTACAGGTTATGTATAGTGTTTCTTGCCTTTAGCTGTATTGGTTATGCTATGCCCTTCATTCTCTGTTCAACAATCTGCTGTTGTCTCCCTTGTATTATTTCCATCCTTGGTGTTAGAGAGGATATGTCACAAAACAGAGGGGCAACTTCTGAATCCATAAATGCCCTCCCAACTTACAAGTTCAAGATGAAGAAAAGTAGAAGAAGTAGCGATGGTAACTCAGCTTCTGCTGATGGGGGAGTTGTGGCTGCAGGAACTGAAAAGGAGCGAGTGATATCTGGAGATGATGCGGTTTGCTGCATCTGCCTGGCAAAGTATGAAAATAACGATGAGCTGCGAGAATTGCCTTGTTCTCATCTTTTTCACAAAGATTGTGTAGACAAGTGGTTAAAGATAAACGCATTGTGCCCTCTTTGCAAGAGTGAGGTTGGTGAGAACTTAACTGGATCAGCCACTGCAGAAGGTGCGAGCCAATAG 1296 0.4398 MHVPEVQIEGPPDTYPLLMERLGSLNSNQHTIEQPESLNGNQHIIDINVAGSSDASTSGSAHDRHSNGVNTSQDVERAGSVRVPVSHPSVLSNNGSNSRNSSFIRRGDSRRSRSPVHSGLWISVELVLLLSQIVASIVVLSLSRHEHPHAPLFPWIVGYASGCVATLPLLYWRYYHHNQSRDQDSSQTRQSSPRVNDPSGTFHSSSRTNGGADGHAAASIPRSSQASPLTNRRMKTLVEYFKISLDCFFAIWFVVGNVWIFGGHSSPEEAPNLYRLCIVFLAFSCIGYAMPFILCSTICCCLPCIISILGVREDMSQNRGATSESINALPTYKFKMKKSRRSSDGNSASADGGVVAAGTEKERVISGDDAVCCICLAKYENNDELRELPCSHLFHKDCVDKWLKINALCPLCKSEVGENLTGSATAEGASQ 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30730g00001 431 MobiDBLite consensus disorder prediction 51 77 - -
Stsc30730g00001 431 MobiDBLite consensus disorder prediction 51 115 - -
Stsc30730g00001 431 ProSiteProfiles Zinc finger RING-type profile. 372 413 IPR001841 -
Stsc30730g00001 431 MobiDBLite consensus disorder prediction 86 103 - -
Stsc30730g00001 431 SMART ring_2 372 412 IPR001841 -
Stsc30730g00001 431 FunFam E3 ubiquitin-protein ligase 355 421 - -
Stsc30730g00001 431 MobiDBLite consensus disorder prediction 184 212 - -
Stsc30730g00001 431 Pfam Ring finger domain 372 413 IPR001841 -
Stsc30730g00001 431 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 354 421 IPR013083 -
Stsc30730g00001 431 SUPERFAMILY RING/U-box 364 419 - -
Stsc30730g00001 431 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 33 416 - -
Stsc30730g00001 431 MobiDBLite consensus disorder prediction 182 227 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30730g00001 Stsc-Chr30730 961 6990 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30730g00001 86 424 C3H Transcription Factor Family AT1G80400 55.425 9.14e-142 409
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30730g00001 - - gmx:100778728 622.468