Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30721g00006 ATGGAAACCAAGAACCTTCAGCGCCGTTTCTCGCTCGGCAGACAATCCTCCATGGCGCCGGAGCTCCCCTCCGGAGACGCCGCCGATGACTTCGCGCCGGAGCCAGTTCACGAATCCGTGCGGCTCATGTACCTTGCCAACGAAGGTGACTTGGAAGGGATCAAGGAGCTCTTAGATTCCGGCAGTGACGTCAACTTCAGGGACATTGACGGCCGCACCGCCCTCCACGTCGCCTCCTGCCAGCGCCGCACCGACGTCGTTGACTTGTTGCTCCAAAATGGAGCTGAGGTTGACCCCAGGGACCGCTGGGGCAGCACGCCTTTAGCTGATGCAATGTACTACAAGAATCATGATGTTGTAAAGCTTTTGGAGAAACATGGTGCAAAACCCCCGGTTGCTCCTATGCATGTACAAAATGCCCGTGAAGTCCCTGAATATGAGATTGATCCTAAAGAACTTGATTTTACAAATAGTGTTGGGATAACTAAGGGGACTTTCCGTATTGCATTGTGGCGGGGAATTCAGGTTGCTGTCAAAACTCTTGAGGAGGAAGTGTTCACTGATGATGATAAAGTTAAGGCGTTTCACGATGAGCTTGCATTACTTCAGAAAGTACGGCATCCAAATGTAGTTCAGTTTTTAGGTGCTGTAACACAAAGCACCCCAATGATAATTGTTACAGAATATTTGCCCCAGGGAGATCTTCGCGCCTACTTGAAGCGGAAAGGTGCATTAAAACCAGGAACAGCTGTAAAATTTGCACTTGACATAGCTAGGGGAATGAACTATTTGCATGAACATAAACCAGAAGCCATTATACACCGAGATCTTGAACCTTCAAATATTCTTCGGGATGATTCTGGGCATCTGAAAGTTGCAGACTTTGGAGTCAGCAAGTTGCTGAAATTTGCCAAAACAGTCAGAGAAGACAAACCAGTGACAAGCCAGGATACATCATGGCGCTATGTTGCTCCAGAGCTTTACAAGAATGAAGAATATGACACTAAAGTGGATGTGTTTTCATTTGCTCTAATACTACAGGAGATGATTGAAGGTTATCCACCATTTTATGCAAAGCCAGAAAACGAAGTTCCTAAAGCATATGTTGAAAATGAACGTCCGCCATTTAAAGCTTCACCCAAGCTTTATGCTTATGGACTTAGGCAGTTAATAGAGGAATGTTGGGATGAAAAACCTTACAGAAGACCAACATTTAGGCAAATAATTGGGAGATTAGAAAACATCAACTACCATCTTGATCAAAAGAAGCGTTGGAAGGTTCAGACTCCTACATGCATCCAGCGTCTCGAGGCCCTATTTAGAGGGTACCGCACAAGCCCGAATAACCGATCATCTCGCTCTACACCAAGATAA 1374 0.4607 METKNLQRRFSLGRQSSMAPELPSGDAADDFAPEPVHESVRLMYLANEGDLEGIKELLDSGSDVNFRDIDGRTALHVASCQRRTDVVDLLLQNGAEVDPRDRWGSTPLADAMYYKNHDVVKLLEKHGAKPPVAPMHVQNAREVPEYEIDPKELDFTNSVGITKGTFRIALWRGIQVAVKTLEEEVFTDDDKVKAFHDELALLQKVRHPNVVQFLGAVTQSTPMIIVTEYLPQGDLRAYLKRKGALKPGTAVKFALDIARGMNYLHEHKPEAIIHRDLEPSNILRDDSGHLKVADFGVSKLLKFAKTVREDKPVTSQDTSWRYVAPELYKNEEYDTKVDVFSFALILQEMIEGYPPFYAKPENEVPKAYVENERPPFKASPKLYAYGLRQLIEECWDEKPYRRPTFRQIIGRLENINYHLDQKKRWKVQTPTCIQRLEALFRGYRTSPNNRSSRSTPR 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30721g00006 457 Pfam Ankyrin repeats (3 copies) 42 130 IPR002110 GO:0005515
Stsc30721g00006 457 SMART ANK_2a 103 132 IPR002110 GO:0005515
Stsc30721g00006 457 SMART ANK_2a 37 66 IPR002110 GO:0005515
Stsc30721g00006 457 SMART ANK_2a 70 99 IPR002110 GO:0005515
Stsc30721g00006 457 PIRSF ILK 2 436 - -
Stsc30721g00006 457 FunFam Os01g0748600 protein 141 432 - -
Stsc30721g00006 457 ProSiteProfiles Ankyrin repeat profile. 70 102 IPR002110 GO:0005515
Stsc30721g00006 457 Gene3D Phosphorylase Kinase; domain 1 146 230 - -
Stsc30721g00006 457 FunFam serine/threonine-protein kinase STY46-like 148 231 - -
Stsc30721g00006 457 CDD STKc_MAP3K-like 169 412 - -
Stsc30721g00006 457 PRINTS Tyrosine kinase catalytic domain signature 337 359 IPR001245 GO:0004672|GO:0006468
Stsc30721g00006 457 PRINTS Tyrosine kinase catalytic domain signature 227 240 IPR001245 GO:0004672|GO:0006468
Stsc30721g00006 457 PRINTS Tyrosine kinase catalytic domain signature 266 284 IPR001245 GO:0004672|GO:0006468
Stsc30721g00006 457 PRINTS Tyrosine kinase catalytic domain signature 383 405 IPR001245 GO:0004672|GO:0006468
Stsc30721g00006 457 ProSiteProfiles Protein kinase domain profile. 148 415 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30721g00006 457 FunFam Integrin-linked protein kinase family 21 146 - -
Stsc30721g00006 457 Gene3D Transferase(Phosphotransferase) domain 1 231 453 - -
Stsc30721g00006 457 Pfam Protein tyrosine and serine/threonine kinase 172 411 IPR001245 GO:0004672|GO:0006468
Stsc30721g00006 457 Gene3D - 35 142 IPR036770 -
Stsc30721g00006 457 ProSiteProfiles Ankyrin repeat region circular profile. 70 102 - -
Stsc30721g00006 457 SUPERFAMILY Ankyrin repeat 41 133 IPR036770 -
Stsc30721g00006 457 MobiDBLite consensus disorder prediction 1 32 - -
Stsc30721g00006 457 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 104 420 - -
Stsc30721g00006 457 SUPERFAMILY Protein kinase-like (PK-like) 171 433 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30721g00006 Stsc-Chr30721 29696 33873 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30721g00006 1 427 MAP Kinase Kinase Kinase AT4G18950 66.667 0.0 590
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-5 Stsc30721g00006 PK_Tyr_Ser-Thr 2.7e-54 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30721g00006 - - gmx:100795964 770