Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30721g00001 ATGGAGAATAATTTGAATCATTATTGTTTTTGTTCCAAGCTTCTTCTTCTGCTTCTCTTTGGTTCCACTACTTCATTGGTTTTCTTGTCACACTTGGCTTCTGCTGCTGCTGCTGCTGCTGCCACACCAAAACTCAACAATGAAGAAGTGAAGGCATTGAAAGAGATAGGGAAGAAGTTAGGGAAGAAGGATTGGGACTTTGGTGTTGATCCATGCAGTGGAAGAGGGAATTGGAACATGTCTAATAAGAAGGGATTTCAAAGCTTTGTGGAATGTGATTGCTTTTCTTTCAATCACTCTTCTTGCCATCTTGTAAGCATATCATTGAAGGCAGAGAATCTGAGTGGAACTCTTCCACCAGAGTTTTCCAAGCTCCATTATCTCAAGATGTTGGACCTTAGTAGAAACCTCATCACTGGTTCTGTACCTCAAGAATGGGCTTCCATGAAATTGGTTGATCTCGAATTAATGGGAAACAAATTATCAGGTCCATTCCCCAAAGCTCTCACAAATATTACAACTCTCAGAAACTTGAGTATTGAGGGAAATTACTTTACAGGCCCTATCCCAAGTGAGATTGGAAAGTTGATCAATCTTGAAAAGATCATTCTGTCATCAAATGGATTCACTGGAATATTGCCAGCATCACTCTCCAAATTAACCAAGTTGAATGATCTGAGGCTAAGCGATAATAGCTTCTCCGGCAAGATACCGGATTTCATAAGTAATTGGACATCGATTGAAAAGCTGCACATGGAGGGTTGTTCTCTTGAGGGGCCTATACCTTCTACCATATCTGCATTGACAAGCTTGAGTGATTTGAGGATAAGTGACCTAAAAGGTTCTAAAGGCTCTTCTTTCCCACCACTAAGTAATATGAAATCCATGAAGACACTGATACTGAGAAAATGCTTGATCAAAGGAAAGATCCCTGACTATATAGGAAGAATGGAAAAACTGAAAATGTTAGATTTGAGTTTCAATGGCTTGAGTGGGGAGATACCTGAATCTTTTTCCAACCTTGACAAACTTGACTACATGTATTTAACTGGGAACATGCTATCAGGGACTATACCCAGCTGGATCCTTGGAACTAGTAAAAATGTGGATATCTCTTCCAATAACTTCAACTGGGATAGCTCCAGTCCAGTTGAATGTCAAAGAGGAGGGAACTTAAACCTTGTTGAGGGATACTCCTCATCTGCAGATACACAAAGTAGGATTCATCCATGCCTAAAAAGGAGCTTTCCATGTCCTGCCTCAGTTACCAAATATCACTACTCCATGCACATAAACTGTGGTGGATCGGAAGCAAATGTCAGCGGCCATGTTTATGAAGCCGATAGAGAAGCAAGAGGTGCATCAATGTTGTATTACCATGATCAGGAATGGGCTCTAAGCAGCACTGGAAACTTCATGGACAATGACATTGACTCTGATCCCTTTATTGTGACCAATACTTCAAGACTAGTCAATGTCTCTGCAATCAATTCAGAACTATACACTACAGCTCGTGTTTCGCCGCTTGCTCTCACATACTATGGCCTATGCCTTATCAATGAAAACTACACTGTTGAGCTTCACTTTGCTGAGATTACTTTCATCAATGACAGGTCATTTTACAGTCTCGGAAGGCGAATTTTCGATGTGTACATCCAGGGGAAATTGGTGTTGAAAGATTTTGATATCCAAAAAGCAGCTGGTGGAACTGGCAAGCCAATTGTGAAGAAATTTAATGCAACTGTCACTGAACATACTTTGAAAATTCACCTCTATTGGGCTGGAAAGGGCACAACCGGCATACCGACTCGAGGAGTTTACGGACCTCTAATATCTGCTATCTCAGTAGAGCCTAATTTCACACCACCATCAGAAGATGGCCACAAAACCTACATCATACTGCTAGCTGCTTGTATAGTTTCTGCTGTTGGAGTAGTTGTTCTTATTTTTCTAGGTGTAATGAGAAGAAAGGGATACATAGGAGGAAGTAATGCAGTGTATAAAGAACTTAGGGGTATAGACCTGCAGACAGGACTGTTTACTTTAAAACAAATCAAAGCAGCAACTAAAAACTTTGATGCAGCTAATAAAATTGGTGAAGGTGGCTTTGGTTCTGTTTACAAGGGCCTGCTATCAGATGGTACTGTAATTGCAGTAAAGCAACTCTCATCAAAATCAAAGCAAGGAAACCGCGAGTTTGTGAATGAGATAGGAATGATATCAGGACTTCAACATCCAAATCTGGTTAAGCTTTATGGATGTTGTGCTGAGGGTAATCAGTTAATACTGATATATGAGTATATGGAAAACAATTGTTTGTCTCGGATGCTATTTGGTAAGGATCCAGAAAGAAAAGTGAAACTGGACTGGCCAACTAGGAAGAAGATTTGTCTTGGTATAGCTAGAGCTTTAGCTTATCTCCATGAAGAGTCTAGAATCAAGATCATTCATAGGGATATAAAGACTAGTAATGTCTTACTAGACAAGGATTTCAATGCCAAAGTTTCAGATTTTGGTTTGGCTAAACTCAATGAAGATGACAAAACCCATGTTAGCACCCGAATTGCAGGAACGATTGGCTATATGGCTCCTGAATATGCAATGCGCGGCTATTTAACTGACAAAGCAGATGTATATAGCTTCGGGGTGGTTGCATTGGAAATCGTCAGCGGAAAGAGCAACACAAATTTCAGACCTAATGAGGAATTTGTTTATCTTCTTGATTGGGCATATGTCTTGCAAGAAAGAGGAAATCTTCTAGAGCTGGTTGATCCAGATTTGGGTTCAGAATATTCAACTAAAGAGGCAATGGTAATGCTAAATGTGGCTCTACTATGTACTAATGCATCTCCTACACTAAGACCAACAATGTCACAAGCTGTGAGCATGCTTGAAGGCTGGACAGACATTCAAGATATACTTTCTGATCCTGGATATTCAGCACATAGCTCAAATTCAAGATATAAGAGTATGAGGAATCATTTCTGGCAGAATCCAAGTAGATCACAAAGCATGTGTAGTATGTATGCTGATGTTGATTCCTCTCACTCACATATTGAAACAGAAGGGAGTTACCATCTTGTAAAAATTAACTCAGACATGTCAGACAACTGA 3114 0.4001 MENNLNHYCFCSKLLLLLLFGSTTSLVFLSHLASAAAAAAATPKLNNEEVKALKEIGKKLGKKDWDFGVDPCSGRGNWNMSNKKGFQSFVECDCFSFNHSSCHLVSISLKAENLSGTLPPEFSKLHYLKMLDLSRNLITGSVPQEWASMKLVDLELMGNKLSGPFPKALTNITTLRNLSIEGNYFTGPIPSEIGKLINLEKIILSSNGFTGILPASLSKLTKLNDLRLSDNSFSGKIPDFISNWTSIEKLHMEGCSLEGPIPSTISALTSLSDLRISDLKGSKGSSFPPLSNMKSMKTLILRKCLIKGKIPDYIGRMEKLKMLDLSFNGLSGEIPESFSNLDKLDYMYLTGNMLSGTIPSWILGTSKNVDISSNNFNWDSSSPVECQRGGNLNLVEGYSSSADTQSRIHPCLKRSFPCPASVTKYHYSMHINCGGSEANVSGHVYEADREARGASMLYYHDQEWALSSTGNFMDNDIDSDPFIVTNTSRLVNVSAINSELYTTARVSPLALTYYGLCLINENYTVELHFAEITFINDRSFYSLGRRIFDVYIQGKLVLKDFDIQKAAGGTGKPIVKKFNATVTEHTLKIHLYWAGKGTTGIPTRGVYGPLISAISVEPNFTPPSEDGHKTYIILLAACIVSAVGVVVLIFLGVMRRKGYIGGSNAVYKELRGIDLQTGLFTLKQIKAATKNFDAANKIGEGGFGSVYKGLLSDGTVIAVKQLSSKSKQGNREFVNEIGMISGLQHPNLVKLYGCCAEGNQLILIYEYMENNCLSRMLFGKDPERKVKLDWPTRKKICLGIARALAYLHEESRIKIIHRDIKTSNVLLDKDFNAKVSDFGLAKLNEDDKTHVSTRIAGTIGYMAPEYAMRGYLTDKADVYSFGVVALEIVSGKSNTNFRPNEEFVYLLDWAYVLQERGNLLELVDPDLGSEYSTKEAMVMLNVALLCTNASPTLRPTMSQAVSMLEGWTDIQDILSDPGYSAHSSNSRYKSMRNHFWQNPSRSQSMCSMYADVDSSHSHIETEGSYHLVKINSDMSDN 1037
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30721g00001 1037 Gene3D Phosphorylase Kinase; domain 1 663 767 - -
Stsc30721g00001 1037 Gene3D - 425 619 - -
Stsc30721g00001 1037 Gene3D Ribonuclease Inhibitor 243 388 IPR032675 -
Stsc30721g00001 1037 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 662 767 - -
Stsc30721g00001 1037 Pfam Protein tyrosine and serine/threonine kinase 695 962 IPR001245 GO:0004672|GO:0006468
Stsc30721g00001 1037 Pfam Malectin domain 428 614 IPR021720 -
Stsc30721g00001 1037 Pfam Leucine rich repeat 295 354 IPR001611 GO:0005515
Stsc30721g00001 1037 Pfam Leucine rich repeat 198 257 IPR001611 GO:0005515
Stsc30721g00001 1037 Gene3D Transferase(Phosphotransferase) domain 1 768 977 - -
Stsc30721g00001 1037 SUPERFAMILY Protein kinase-like (PK-like) 676 1000 IPR011009 -
Stsc30721g00001 1037 ProSitePatterns Serine/Threonine protein kinases active-site signature. 815 827 IPR008271 GO:0004672|GO:0006468
Stsc30721g00001 1037 FunFam Putative LRR receptor-like serine/threonine-protein kinase 768 976 - -
Stsc30721g00001 1037 Gene3D Ribonuclease Inhibitor 175 242 IPR032675 -
Stsc30721g00001 1037 Gene3D Ribonuclease Inhibitor 51 174 IPR032675 -
Stsc30721g00001 1037 ProSiteProfiles Protein kinase domain profile. 692 968 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30721g00001 1037 ProSitePatterns Protein kinases ATP-binding region signature. 698 720 IPR017441 GO:0005524
Stsc30721g00001 1037 CDD STKc_IRAK 698 966 - -
Stsc30721g00001 1037 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 23 1003 - -
Stsc30721g00001 1037 FunFam Putative LRR receptor-like serine/threonine-protein kinase isoform A 244 393 - -
Stsc30721g00001 1037 SMART serkin_6 692 968 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30721g00001 1037 FunFam Probable LRR receptor-like serine/threonine-protein kinase RFK1 51 213 - -
Stsc30721g00001 1037 SUPERFAMILY L domain-like 97 376 - -
Stsc30721g00001 1037 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 426 619 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30721g00001 Stsc-Chr30721 4422 10601 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30721g00001 226 1022 Receptor kinase-like Gene Family AT1G07650 65.504 0.0 1018
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Stsc30721g00001 PK_Tyr_Ser-Thr 2.1e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30721g00001 - - gmx:100784864 1628.22