Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30720g00004 ATGACCGAAATTGATATGATATCGAATATACGGCATCCAAATCTTGTGGGACTAATCGGCTGCTGTGTCGAGGGTAGTCATCGAATATTGGTGTATGAATTTCTGGAGAACAATAGCCTTGCCAGTTCTTTACTTGGTTCTAAAAGTAAATATGTTGCTCTGGATTGGCCTAAGAGGGCTGCTATCTGCCGTGGTACAGCTTCTGGTTTGGTGTTCCTCCACAACGAGGCGCAGCCAAACATTGTTCACAGAGATATCAAGGCCAGCAACATCCTTCTGGACGAGAACTTTAGTCCAAAAATCGGAGATTTTGGTCTGGCAAAACTTTTTCCTGATAATGTGACCCATGTTAGCACTCGAGTTGCAGGAACGGTTGGATATCTGGCACCGGAATACGCACTTCTAGGACAGCTTACAAAGAAAGCAGATGTGTACAGTTTTGGGGTTCTCATGCTTGAAATAATCAGTGGTAAAAGTAGTAGCAAGGCTGCATTTGGAGAAAATCTTTTGGTTCTGGTGGAGTGGGCTTGGAAGCTCAAAGAGGAAAATAGGCTTCTGGACATTGTTGATCCAGAACTAGCCGAATTCGATGAGACGGAGGTTTTTCGGTTCATTAAGGTAGCTCTATTTTGTACACAGGCTGCAGCTCAGAATCGGCCTAACATGAAGCAAGTGATGGAAATGCTTTCGAAGGATGTTCATATAAACGAGAAGGCGTTGACTGAGCCTGGAATATACAAATGGCACAACTCTAGTAAGATGGGAGGAGGAGGTTCTTCGAATGAGACACCATCTTCTCAACAATTCAAGAACAAAAAATCCGGAAAGTCACATGAAACCTCAATGAACTTTAGCAGTAACGACTTCATGACAGATATGCTTCCCAGATGA 891 0.4343 MTEIDMISNIRHPNLVGLIGCCVEGSHRILVYEFLENNSLASSLLGSKSKYVALDWPKRAAICRGTASGLVFLHNEAQPNIVHRDIKASNILLDENFSPKIGDFGLAKLFPDNVTHVSTRVAGTVGYLAPEYALLGQLTKKADVYSFGVLMLEIISGKSSSKAAFGENLLVLVEWAWKLKEENRLLDIVDPELAEFDETEVFRFIKVALFCTQAAAQNRPNMKQVMEMLSKDVHINEKALTEPGIYKWHNSSKMGGGGSSNETPSSQQFKNKKSGKSHETSMNFSSNDFMTDMLPR 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30720g00004 296 ProSitePatterns Serine/Threonine protein kinases active-site signature. 81 93 IPR008271 GO:0004672|GO:0006468
Stsc30720g00004 296 Gene3D Phosphorylase Kinase; domain 1 1 35 - -
Stsc30720g00004 296 MobiDBLite consensus disorder prediction 253 271 - -
Stsc30720g00004 296 MobiDBLite consensus disorder prediction 251 296 - -
Stsc30720g00004 296 Gene3D Transferase(Phosphotransferase) domain 1 36 244 - -
Stsc30720g00004 296 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 1 263 - -
Stsc30720g00004 296 SUPERFAMILY Protein kinase-like (PK-like) 2 229 IPR011009 -
Stsc30720g00004 296 SMART serkin_6 1 229 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30720g00004 296 FunFam Putative LRR receptor-like serine/threonine-protein kinase 35 241 - -
Stsc30720g00004 296 PIRSF TyrPK_CSF1-R 1 53 - -
Stsc30720g00004 296 PIRSF TyrPK_CSF1-R 36 292 - -
Stsc30720g00004 296 Pfam Protein tyrosine and serine/threonine kinase 1 229 IPR001245 GO:0004672|GO:0006468
Stsc30720g00004 296 ProSiteProfiles Protein kinase domain profile. 1 235 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30720g00004 Stsc-Chr30720 12592 14983 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30720g00004 1 244 Receptor kinase-like Gene Family AT1G56120 54.098 8.28e-86 273
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Stsc30720g00004 PK_Tyr_Ser-Thr 8e-36 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30720g00004 - - gmx:100816683 460.299