Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30720g00003 ATGATTAGAAATTGCTTTGGTGCTTTGAATTGGTGTGGAGGGAGGGGGGATAGTGATACTGCTGAGAAGCCACATGAACAAGTGATTGCATCCAAACAATTTACCTATAACTCGTTGCGATCGGCAACCGGAGATTTTCACCCTTCAAGCAAACTTGGTGGAGGAGGTTATGGAGTTGTCCACAAGGGAGTTTTAAGAGACGGTACTCCAGTCGCCATCAAGTCTCTTTCTGTAGAGTCTAAACAAGGAACCCGTGAATTTATGACCGAAATTGATATGATATCGAATATACGGCATCCAAATCTTGTGGGACTAATCGGCTGCTGTGTCGAGGGTAGTCATCGAATATTGGTGTATGAATTTCTGGAGAACAATAGCCTTGCCAGTTCTTTACTTGGTTCTAAAAGTAAATATGTTGCTCTGGATTGGCCTAAGAGGGCTGCTATCTGCCGTGGTACAGCTTCTGGTTTGGTGTTCCTCCACAACGAGGCGCAGCCAAACATTGTTCACAGAGATATCAAGGCCAGCAACATCCTTCTGGACGAGAACTTTAGTCCAAAAATCGGAGATTTTGGTCTGGCAAAACTTTTTCCTGATAATGTGACCCATGTTAGCACTCGAGTTGCAGGAACGGTTGGATATCTGGCACCGGAATACGCACTTCTAGGACAGCTTACAAAGAAAGCAGATGTGTACAGTTTTGGGGTTCTCATGCTTGAAATAATCAGTGGTAAAAGTAGTAGCAAGGCTGCATTTGGAGAAAATCTTTTGGTTCTGGTGGAGTGGGCTTGGAAGCTCAAAGAGGAAAATAGGCTTCTGGACATTGTTGATCCAGAACTAGCCGAATTCGATGAGACGGAGGTTTTTCGGTTCATTAAGGTAGCTCTATTTTGTACACAGGCTGCAGCTCAGAATCGGCCTAACATGAAGCAAGTGATGGAAATGCTTTCGAAGGATGTTCATATAAACGAGAAGGCGTTGACTGAGCCTGGAATATACAAATGGCACAACTCTAGTAAGATGGGAGGAGGAGGTTCTTCGAATGAGACACCATCTTCTCAACAATTCAAGAACAAAAAATCCGGAAAGTCACATGAAACCTCAATGAACTTTAGCAGTAACGACTTCATGACAGATATGCTTCCCAGATGA 1152 0.4375 MIRNCFGALNWCGGRGDSDTAEKPHEQVIASKQFTYNSLRSATGDFHPSSKLGGGGYGVVHKGVLRDGTPVAIKSLSVESKQGTREFMTEIDMISNIRHPNLVGLIGCCVEGSHRILVYEFLENNSLASSLLGSKSKYVALDWPKRAAICRGTASGLVFLHNEAQPNIVHRDIKASNILLDENFSPKIGDFGLAKLFPDNVTHVSTRVAGTVGYLAPEYALLGQLTKKADVYSFGVLMLEIISGKSSSKAAFGENLLVLVEWAWKLKEENRLLDIVDPELAEFDETEVFRFIKVALFCTQAAAQNRPNMKQVMEMLSKDVHINEKALTEPGIYKWHNSSKMGGGGSSNETPSSQQFKNKKSGKSHETSMNFSSNDFMTDMLPR 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30720g00003 383 ProSiteProfiles Protein kinase domain profile. 46 322 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30720g00003 383 Gene3D Transferase(Phosphotransferase) domain 1 122 330 - -
Stsc30720g00003 383 SUPERFAMILY Protein kinase-like (PK-like) 25 316 IPR011009 -
Stsc30720g00003 383 SMART serkin_6 46 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30720g00003 383 FunFam Putative LRR receptor-like serine/threonine-protein kinase 122 328 - -
Stsc30720g00003 383 ProSitePatterns Serine/Threonine protein kinases active-site signature. 168 180 IPR008271 GO:0004672|GO:0006468
Stsc30720g00003 383 MobiDBLite consensus disorder prediction 338 383 - -
Stsc30720g00003 383 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 19 121 - -
Stsc30720g00003 383 Gene3D Phosphorylase Kinase; domain 1 15 121 - -
Stsc30720g00003 383 MobiDBLite consensus disorder prediction 340 358 - -
Stsc30720g00003 383 CDD STKc_IRAK 52 318 - -
Stsc30720g00003 383 Pfam Protein tyrosine and serine/threonine kinase 49 316 IPR001245 GO:0004672|GO:0006468
Stsc30720g00003 383 ProSitePatterns Protein kinases ATP-binding region signature. 52 74 IPR017441 GO:0005524
Stsc30720g00003 383 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 31 350 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30720g00003 Stsc-Chr30720 12592 16238 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30720g00003 34 331 Receptor kinase-like Gene Family AT1G56120 54.362 2.23e-106 331
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Stsc30720g00003 PK_Tyr_Ser-Thr 1.9e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30720g00003 - - gmx:100816683 587.415