Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30717g00003 ATGCATCTTAGTAACTGCAAGGGATCCACTATGTCAACGCCTAGTTCATCAGGCTCACATCTGAGGTCCACCGGAGATGCTGTCTCCGACCAGTTTCCGGCGGGTCTCCGGGTGCTGGTGGTGGATGATGACCCCACCTGCCTCATGATCCTTGAGAAGATGCTTAAAGCTTGCCTCTATGAAGTTACAAAATGCAAGCGTGCTGAGGTTGCATTGTCACTTCTGAGAGAGAACAAGAATGGATTTGACATTGTTATAAGTGATGTGCATATGCCTGACATGGATGGATTTAAGCTTTTAGAGCATATTGGGTTGGAGATGGACCTTCCAGTTATTATGATGTCCGCAGACGATGGAAAGCATGTTGTAATGAAGGGCGTGACACATGGTGCTTGTGATTACCTAATTAAACCTGTGCGCATCGAGGCTTTGAAGAATATATGGCAGCATGTGGTTCGGAAGAGAAAGACCGGTTGGAGAGATCCAGAGCAATCAGGCAGCATAGATGAAGGAGATCGGCAGCAAAAGGCATCTGATGATGCGGATTACTCATCGTCTGCAAATGAAGGGAAATGCTCAAAGAAGAGAAGGGATGAAGAAGAAGATGCAGATGAGAGGGATGATAGTTCGACTTTGAAGAAGCCACGGGTGGTTTGGTCTGTTGAGCTCCATCAACAGTTTATGGCTGCTGTAAACCAACTTGGAATTGACAAGGCCGTTCCTAAAAAGATTCTGGAATTGATGAATGTTCCTGGACTTACCAGAGAAAATGTTGCTAGCCACCTTCAGAAATACCGATTGTATCTTCGAAGGTTGAGTGGTGTTTCACAGCAGCAGAGTAACTTGAACAATTCCTTCATGAACCCACACGATCCAACATTTGGGTCGACATCGATCAATGGGATTGACCTTCAAGCCCTTTCAGTCGCTAGCCAGCTCCCAGCACAAAGTCTAGCCAAGCTTCAAGCAGCAGGACTAGGCAGGTCAACTGCAAAACCAGTTATGTCCACGCCTCTAGTCGAGCAACGGAACCTATTCAGTTTTGAGAGCCCGAGATTAAGATTTGGAGAAGGGCAAATGCAACATTTGAATACTAATAAACCGATGAACTTGCTTCACGGAATCCCTACCAACATGGAGCCAAAGCAGCTTGCCAATCTACACCAATCTGCCCAATCCCTTGGGAACTTGAATATGCGAGTCAATGCTTCTGTTGCACAGAGAAGCCCCTTGTTGATGCAGATGGGTCAATCCCAACCAAGAGGTCAGATTGTAGGTGAAAATGGTTCTCATATTAACCAGCTTCCAACTTCATTGTTGCAACCACCAGTACCAACCCGAATGTCCAACGGTGTTATCAGAAATGGGATTGCTAGCTCCAGCAACATAAATCCTGCTTATAATCAAGTACCACAAAGCTCTTCATATATGAATTTTCCCATGAATCAAACCAATGATATGTCAACCAGAAGTTTCCCTCTTGGAAGCAATCCAGGTATATCGAATATCACAACAAAAGGAATGTTACAGGAGGAAGTTACTTCAGGAATCAAAGGATCCAGCGGCTTTGTTCCGAGTTATGATATTTTTAACGAACTCCAACCTCAAAAATCCCATGATTGGGAGTTAAGAAACGCTGGTCTGACATATGATGCTACTCAGCATTCAAATCATGTACAAGGTAACATTGATGTCTCAGTCTCTCCGTCAGTTTTAGTCCATCCGGGTTTTTCATCTATGCAACAAACTGGACAAAATAGAGATACTACTTCTTCAATGGGGAAAGCTGTGTTCTCCATGGGTGAAGGCATGGNNNNNNNNNNACTTCACATCGACAATTCAGTAAGAGTGAAGGCTGAAAGAGTTCCTGATGCAAGCTCCCAGACTAACTTCTTCCCTGAACAATATGGGCAGGAGGATCTTATGAGTGCACTTCTGAAACAGGAAGGCATTGGACTAGCTGAGAATGAGTTTGACTTCGACGGATATTCCTTAGACAACATTCCCGTCTAG 2013 0.4441 MHLSNCKGSTMSTPSSSGSHLRSTGDAVSDQFPAGLRVLVVDDDPTCLMILEKMLKACLYEVTKCKRAEVALSLLRENKNGFDIVISDVHMPDMDGFKLLEHIGLEMDLPVIMMSADDGKHVVMKGVTHGACDYLIKPVRIEALKNIWQHVVRKRKTGWRDPEQSGSIDEGDRQQKASDDADYSSSANEGKCSKKRRDEEEDADERDDSSTLKKPRVVWSVELHQQFMAAVNQLGIDKAVPKKILELMNVPGLTRENVASHLQKYRLYLRRLSGVSQQQSNLNNSFMNPHDPTFGSTSINGIDLQALSVASQLPAQSLAKLQAAGLGRSTAKPVMSTPLVEQRNLFSFESPRLRFGEGQMQHLNTNKPMNLLHGIPTNMEPKQLANLHQSAQSLGNLNMRVNASVAQRSPLLMQMGQSQPRGQIVGENGSHINQLPTSLLQPPVPTRMSNGVIRNGIASSSNINPAYNQVPQSSSYMNFPMNQTNDMSTRSFPLGSNPGISNITTKGMLQEEVTSGIKGSSGFVPSYDIFNELQPQKSHDWELRNAGLTYDATQHSNHVQGNIDVSVSPSVLVHPGFSSMQQTGQNRDTTSSMGKAVFSMGEGMXXXXLHIDNSVRVKAERVPDASSQTNFFPEQYGQEDLMSALLKQEGIGLAENEFDFDGYSLDNIPV 670
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30717g00003 670 SMART REC_2 36 148 IPR001789 GO:0000160
Stsc30717g00003 670 MobiDBLite consensus disorder prediction 158 211 - -
Stsc30717g00003 670 MobiDBLite consensus disorder prediction 158 179 - -
Stsc30717g00003 670 MobiDBLite consensus disorder prediction 421 445 - -
Stsc30717g00003 670 Gene3D - 36 165 - -
Stsc30717g00003 670 Pfam Response regulator receiver domain 38 146 IPR001789 GO:0000160
Stsc30717g00003 670 MobiDBLite consensus disorder prediction 474 499 - -
Stsc30717g00003 670 SUPERFAMILY Homeodomain-like 211 271 IPR009057 -
Stsc30717g00003 670 Pfam Myb-like DNA-binding domain 216 266 IPR001005 -
Stsc30717g00003 670 MobiDBLite consensus disorder prediction 1 26 - -
Stsc30717g00003 670 MobiDBLite consensus disorder prediction 421 452 - -
Stsc30717g00003 670 MobiDBLite consensus disorder prediction 189 211 - -
Stsc30717g00003 670 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 213 270 IPR017930 -
Stsc30717g00003 670 FunFam Two-component response regulator 210 273 - -
Stsc30717g00003 670 PIRSF RR_ARR_type-B 15 662 IPR017053 GO:0003677|GO:0003700|GO:0009736
Stsc30717g00003 670 CDD REC_typeB_ARR-like 38 152 - -
Stsc30717g00003 670 SUPERFAMILY CheY-like 35 156 IPR011006 -
Stsc30717g00003 670 Gene3D - 211 273 - -
Stsc30717g00003 670 ProSiteProfiles Response regulatory domain profile. 37 152 IPR001789 GO:0000160
Stsc30717g00003 670 PANTHER TWO-COMPONENT RESPONSE REGULATOR 36 330 IPR045279 GO:0009736
Stsc30717g00003 670 NCBIfam myb-like DNA-binding domain, SHAQKYF class 214 267 IPR006447 GO:0003677
Stsc30717g00003 670 FunFam Two-component response regulator 36 173 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30717g00003 Stsc-Chr30717 18181 22050 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30717g00003 70 670 Response Regulator Gene Family AT3G16857 52.012 1.92e-179 522
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Stsc30717g00003 Response_reg 1.3e-22 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30717g00003 - K14491 gmx:100814930 970.304