Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30716g00004 ATGCAGGGTGGATTAGAGTTACCGCCAGGGTTCAGGTTCCACCCGAGCGACGAAGAATTAGTGAACCACTATCTCTGCAAGAAATGCGCAAAGCAATCAATTGCCGCTCCAATAATCAAAGAGATCGATTTGTACAAGTTCGATCCATGGCACCTTCCAGAAATGGCCTTGTATGGAGAAAAGGAATGGTACTTCTTTTCACCGAGGGACAGAAAATATCCTAATGGATCCCGGCCGAACCGGGCGGCTGGGAGCGGGTATTGGAAGGCCACAGGGGCGGATAAGCCGATAGGGAAGCCGAAGGCGCTGGGGATAAAGAAAGCTTTAGTGTTCTACGCCGGAAAGGCCCCTAAAGGGGTGAAGACAAATTGGATTATGCATGAGTACCGTCTTGCCAATGTTGACAGATCCGCCGCCAACAAGCACAACAACAATAACTTGAGGCTTGATGATTGGGTGTTGTGTAGAATCTACAACAAGAAAGGGAAGATTGAGAAATTCAACTCTCCCACAACAGGGTTTGAACAGAAAGTATCAAAGTTTTCACCAGGGGAGATACTTAACTATGATCATGATCATGATCATGAGCATGAGACCAAGCCTCAGATTATCCATAACTTCTCCAACAATGACCACCAATTGTACATGGACACATCAGATTCTGTTCCTAGGCTGCACACGGACTCTAGCTGCTCGGACCACGCGGTTTCGCCGGTGTCCGGCGGTGACAAGGAGGTGGAGAGCAACCCAAAGTGGAAGAGCAATGAGCTAGATATGCAGCTGTTTGATGCCTTTGATTTTCAGCTCAACAACTATGATAATAACCTCCCAATGGAAGATGACCTTTTTGGAAATCAGTTCCAAATGAGCCAGCTCATGTCATTCCAAGACAATTTCTTGTTCCAACAAAAGCCATTTTGA 921 0.4669 MQGGLELPPGFRFHPSDEELVNHYLCKKCAKQSIAAPIIKEIDLYKFDPWHLPEMALYGEKEWYFFSPRDRKYPNGSRPNRAAGSGYWKATGADKPIGKPKALGIKKALVFYAGKAPKGVKTNWIMHEYRLANVDRSAANKHNNNNLRLDDWVLCRIYNKKGKIEKFNSPTTGFEQKVSKFSPGEILNYDHDHDHEHETKPQIIHNFSNNDHQLYMDTSDSVPRLHTDSSCSDHAVSPVSGGDKEVESNPKWKSNELDMQLFDAFDFQLNNYDNNLPMEDDLFGNQFQMSQLMSFQDNFLFQQKPF 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30716g00004 306 FunFam NAC transcription factor 16 164 - -
Stsc30716g00004 306 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 6 225 - -
Stsc30716g00004 306 SUPERFAMILY NAC domain 4 160 IPR036093 GO:0003677|GO:0006355
Stsc30716g00004 306 ProSiteProfiles NAC domain profile. 7 160 IPR003441 GO:0003677|GO:0006355
Stsc30716g00004 306 MobiDBLite consensus disorder prediction 226 250 - -
Stsc30716g00004 306 Gene3D NAC domain 16 165 IPR036093 GO:0003677|GO:0006355
Stsc30716g00004 306 Pfam No apical meristem (NAM) protein 8 131 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30716g00004 Stsc-Chr30716 28391 30039 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30716g00004 1 306 NAC Transcription Factor Family AT1G01720 58.466 8.19e-119 341
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Stsc30716g00004 NAM 1.4e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30716g00004 - - adu:107463232 591.652