Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Stsc30715g00001 | ATGTCTAAGAGGGTTCTTTGTAAATTCTTTGCTCATGGAGCATGTCTGAAAGGGGAGCATTGTGAATATTCTCATGACTGGAATGATCCTCCGAATTTGATATGCACATTTTATCAGAAAGGAGTTTGTGCTTATGGTAGTCGTTGCAGATATGATCATGTCAAAGTTTCTCGACCACAATCCTCCACGGCTTCTTCCTCAATAACTGAACAGCGGCCCCCGGTTTCAGATGATGTTGTATTTGGTAATACAGGAATTACATCAAACGGTGTTGCAGCCGCTCCTGAGTTTTCTCCTTCCAGAAGTCCTTCCCTTATTCCCAGCACGCCTGGTTGGAATCAAGAACAGCAGTATCATGAATTTGTAGGGGAAGATGATGTTGGTCAATCAAGAATTATTTCACCCGCTGAGATTCCTATCTGTTCTTTTGCTGCGGCTGGCAACTGCCCACGAGGGGAAACTTGTCCTCATATCCATGGAGATCTGTGTCGTACTTGTGGAAAACACTGCTTGCATCCTTTCCGACCTGAGGAAAGAGCAGAACATATAAAGAGTTGTGAAAATAAGCAAAAGCATCTTGAGGCATTGAAACAAAGTCAAGAAATCGAATGCAGTGTTTGCCTTGAGCGTGTTCTTTCAAAGCCTACTGCAGCAGAGAGAAAGTTCGGGCTGTTATCTGAATGTGACCATCCGTTCTGCATATCGTGTATTAGAAATTGGCGTAGTAGCAATCCAACATTGGGGATGGATGTCAATAGTACATTGAGGGCATGTCCTATCTGTCGCAAGCTATCTTACTTTGTCATTCCAAGTGTCATTTGGTATTCTACGCAAGAAGAAAAAATGGAAATCGTTGACAGCTACAAGGCAAAGCTCAAGTCCATAGATTGCAAGCATTTTGACTTTGGCGATGGGAACTGTCCTTTTGGAACAAGTTGTTTCTACAAGCATGCATATCGAGATGGTCGTCTTGAGGAGGTAGTTCTGCGACATCTTGGAGCTGCAGATGGCGATACAGTGATTGCCAAAGATATCAGGTTGTCAGATTTCCTAGCTAGCATGCATTTACAATGA | 1074 | 0.432 | MSKRVLCKFFAHGACLKGEHCEYSHDWNDPPNLICTFYQKGVCAYGSRCRYDHVKVSRPQSSTASSSITEQRPPVSDDVVFGNTGITSNGVAAAPEFSPSRSPSLIPSTPGWNQEQQYHEFVGEDDVGQSRIISPAEIPICSFAAAGNCPRGETCPHIHGDLCRTCGKHCLHPFRPEERAEHIKSCENKQKHLEALKQSQEIECSVCLERVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSNPTLGMDVNSTLRACPICRKLSYFVIPSVIWYSTQEEKMEIVDSYKAKLKSIDCKHFDFGDGNCPFGTSCFYKHAYRDGRLEEVVLRHLGAADGDTVIAKDIRLSDFLASMHLQ | 357 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Stsc30715g00001 | 357 | SMART | c3hfinal6 | 1 | 27 | IPR000571 | GO:0046872 | |
Stsc30715g00001 | 357 | SMART | c3hfinal6 | 136 | 161 | IPR000571 | GO:0046872 | |
Stsc30715g00001 | 357 | SMART | c3hfinal6 | 291 | 319 | IPR000571 | GO:0046872 | |
Stsc30715g00001 | 357 | SMART | c3hfinal6 | 31 | 55 | IPR000571 | GO:0046872 | |
Stsc30715g00001 | 357 | Pfam | RNA-binding, Nab2-type zinc finger | 6 | 25 | - | - | |
Stsc30715g00001 | 357 | Pfam | RNA-binding, Nab2-type zinc finger | 296 | 318 | - | - | |
Stsc30715g00001 | 357 | Gene3D | - | 33 | 165 | - | - | |
Stsc30715g00001 | 357 | Gene3D | - | 1 | 32 | - | - | |
Stsc30715g00001 | 357 | SUPERFAMILY | CCCH zinc finger | 3 | 26 | IPR036855 | GO:0046872 | |
Stsc30715g00001 | 357 | SUPERFAMILY | RING/U-box | 192 | 268 | - | - | |
Stsc30715g00001 | 357 | CDD | RING-HC_MKRN | 202 | 262 | - | - | |
Stsc30715g00001 | 357 | ProSiteProfiles | Zinc finger RING-type profile. | 204 | 262 | IPR001841 | - | |
Stsc30715g00001 | 357 | SMART | ring_2 | 204 | 261 | IPR001841 | - | |
Stsc30715g00001 | 357 | Coils | Coil | 183 | 203 | - | - | |
Stsc30715g00001 | 357 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 179 | 299 | IPR013083 | - | |
Stsc30715g00001 | 357 | ProSitePatterns | Zinc finger RING-type signature. | 228 | 237 | IPR017907 | - | |
Stsc30715g00001 | 357 | ProSiteProfiles | Zinc finger C3H1-type profile. | 135 | 162 | IPR000571 | GO:0046872 | |
Stsc30715g00001 | 357 | Pfam | Zinc finger, C3HC4 type (RING finger) | 204 | 261 | IPR018957 | GO:0046872 | |
Stsc30715g00001 | 357 | PANTHER | MAKORIN-RELATED | 5 | 330 | IPR045072 | GO:0000209|GO:0061630 | |
Stsc30715g00001 | 357 | SUPERFAMILY | CCCH zinc finger | 32 | 53 | IPR036855 | GO:0046872 | |
Stsc30715g00001 | 357 | ProSiteProfiles | Zinc finger C3H1-type profile. | 29 | 56 | IPR000571 | GO:0046872 | |
Stsc30715g00001 | 357 | Pfam | CCCH-type zinc finger | 34 | 53 | IPR041367 | - | |
Stsc30715g00001 | 357 | ProSiteProfiles | Zinc finger C3H1-type profile. | 1 | 28 | IPR000571 | GO:0046872 | |
Stsc30715g00001 | 357 | ProSiteProfiles | Zinc finger C3H1-type profile. | 291 | 320 | IPR000571 | GO:0046872 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Stsc30715g00001 | Stsc-Chr30715 | 17062 | 22443 | Dispersed |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C3H | Stsc30715g00001 | zf-C3HC4 | 2.9e-07 | CL0229 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Stsc30715g00001 | K15687 | - | gmx:100787817 | 645.58 |