Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30712g00006 ATGAACGACTTGCTCTCTCCAGCGCGGGACAATAACCAGCATGTGATCGAGATGGCCGAAACGACGCCGTCTGTAGAGAACAATCTCAACAAATTCTTCGAAGAAGTTGAGTCCCTAAAACAGGAGCTGAGGGAGCTCGAGAACATCCACAACAGCCTCCGGGCCTCCAACGAGAAGAGCAAGGCCCTTCATACTGCGAAAGATGTGAAGGACCTTCGCTCTCGCATGGACGCTGATGTCACCACTGCCCTTAAGAAGGCCAGGGTCATCAAGGCCCGGTTGGAGGCCCTCGATCGGGCCAACGAGGCTAGTCTCTCCGTGTCCGGTTGTGGGCCTGGGTCTTCCTCTGACCGGACACGGACTTCCGTGGTGAATGGTCTCAGAAAGAAGCTGAAGGAGTCCATGGAGAGCTTCAACAAACTCAGGGATCAGATATCGTCCGAGTATAGGAACACCGTACAACGCCGCTACTACACTGTCACCGGCGAGAATCCTGATGACAAGACCATTGACCTTCTCATCTCTACCGGGGAGAGTGAAAGTTTCCTCCAGAAAGCTATCCAGCAGCAAGGGAGAGCATCGGTGATGAACACAATTCAGGAGATTCAAGAGAGGCACGGTGCGGTGAAAGAGATAGAGAGGAACCTTAACGAGCTGCACCAGGTGTTCTTGGACATGTCAGTGTTGGTCCAAACACAGGGTGAACAGCTCGACGACATTGAGAGCCACATGGCACGTGCTAATTCGTACGTCAGGGGTGGCGTACAGCAACTCCAAGTTGCGAGAAAGCACCAGAAGAACTCTCGCAAGTGGACCTGTATTGCCATCATATTGCTTCTCATAATTGCCTTGGCTATAATCCTTCCCCTAGTTTTGAAAAACTGA 885 0.5209 MNDLLSPARDNNQHVIEMAETTPSVENNLNKFFEEVESLKQELRELENIHNSLRASNEKSKALHTAKDVKDLRSRMDADVTTALKKARVIKARLEALDRANEASLSVSGCGPGSSSDRTRTSVVNGLRKKLKESMESFNKLRDQISSEYRNTVQRRYYTVTGENPDDKTIDLLISTGESESFLQKAIQQQGRASVMNTIQEIQERHGAVKEIERNLNELHQVFLDMSVLVQTQGEQLDDIESHMARANSYVRGGVQQLQVARKHQKNSRKWTCIAIILLLIIALAIILPLVLKN 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30712g00006 294 SUPERFAMILY t-snare proteins 27 254 IPR010989 GO:0016020|GO:0016192
Stsc30712g00006 294 MobiDBLite consensus disorder prediction 107 122 - -
Stsc30712g00006 294 Gene3D - 188 292 - -
Stsc30712g00006 294 CDD SNARE_syntaxin1-like 198 259 - -
Stsc30712g00006 294 Pfam SNARE domain 235 287 IPR000727 -
Stsc30712g00006 294 ProSitePatterns Syntaxin / epimorphin family signature. 205 244 IPR006012 GO:0005484|GO:0006886|GO:0016020
Stsc30712g00006 294 FunFam Qa-SNARE, Sso1/Syntaxin1-type, SYP12A-group 26 156 - -
Stsc30712g00006 294 PANTHER SYNTAXIN 32 280 IPR045242 -
Stsc30712g00006 294 SMART SynN_4 24 150 IPR006011 GO:0016020
Stsc30712g00006 294 SMART tSNARE_6 194 261 IPR000727 -
Stsc30712g00006 294 CDD SynN 29 186 IPR006011 GO:0016020
Stsc30712g00006 294 Gene3D - 25 154 - -
Stsc30712g00006 294 Coils Coil 29 63 - -
Stsc30712g00006 294 FunFam Syntaxin 132 192 292 - -
Stsc30712g00006 294 Pfam Syntaxin 31 234 IPR006011 GO:0016020
Stsc30712g00006 294 Coils Coil 124 148 - -
Stsc30712g00006 294 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 199 261 IPR000727 -
Stsc30712g00006 294 MobiDBLite consensus disorder prediction 104 123 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30712g00006 Stsc-Chr30712 26511 28816 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30712g00006 28 273 SNARE and Associated Proteins AT3G11820 71.138 7.80e-131 372
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30712g00006 K08486 - gmx:100808718 423.32