Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30712g00003 ATGGCTGCTGCTACAGCTTCTGTTTCCTATTCTTCTTCTTCTATCTGCAACAGAATATACAACCCCACCTTCACCCACACTTCCATTTCACTCACAACCAACTTCCCCCACAGACCCATCTCTTACAAACCCCTCACCTTCAACCCCAAGCCTCAAAGTTTCAATCTTTTCCCTCTCCCTCTTCGTCCTTCCTCCGCTTCATTCGATGGATTCGAAGCCTCTCAAGAACCACAACCAGAAGAGACCTCTGAAACACCTCAACAACAAGAAGAGCAAAGGGTTTCAGATTCCAATGACGCTGGGAGGCTCTATGTTGGAAACTTGCCTTATTCAATTACCTCCACCGAATTGTCCGAACTCTTTGGAGAAGCTGGCACTGTTGTGTCTGTTGAGATTGTGTATGATCGTGTCACGGATAGAAGCAGAGGATTTGCATTTGTTACAATGGGGAGTGTTGGTGATGCTCAAGAAGCAATTCGAATGTTTGATGGCTCCCAAGTTGGTGGTAGGACCGTTAAGGTAAACTTCCCAGAAGTGCCCAAGGGAGGTGAAAGGTTGGTAATGGGGCCGAAAATTAGGAACAACTCCAGAGGCTTTGTAGACAGCCCTCACAAGCTTTATGCTGGAAACCTTGGTTGGAGACTGACTTCGGAGGGTCTTCGAGATGCCTTCGCTGAGCAGCCAGGCTTATTGAGTGCCAAGGTCATCTATGAGAGGGACTCTGGAAGATCTCGAGGTTTTGGATTCATTACTTTTCAAACTGCTGAGGATGTAGAGGCTGCTTTGAATGCTATGAACGGCGTGGAGATTGAAGGTCGACCTATAAGGTTGAATATGGCTTCAGAGAGAGCGCCTTCATCTCCACCAAGAAGTAATGTTGATAGCTCAGAATTGTATTCTAGTGCCAGTACATGA 915 0.4678 MAAATASVSYSSSSICNRIYNPTFTHTSISLTTNFPHRPISYKPLTFNPKPQSFNLFPLPLRPSSASFDGFEASQEPQPEETSETPQQQEEQRVSDSNDAGRLYVGNLPYSITSTELSELFGEAGTVVSVEIVYDRVTDRSRGFAFVTMGSVGDAQEAIRMFDGSQVGGRTVKVNFPEVPKGGERLVMGPKIRNNSRGFVDSPHKLYAGNLGWRLTSEGLRDAFAEQPGLLSAKVIYERDSGRSRGFGFITFQTAEDVEAALNAMNGVEIEGRPIRLNMASERAPSSPPRSNVDSSELYSSAST 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30712g00003 304 FunFam 33 kDa ribonucleoprotein, chloroplastic 186 290 - -
Stsc30712g00003 304 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 206 276 IPR000504 GO:0003723
Stsc30712g00003 304 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 103 173 IPR000504 GO:0003723
Stsc30712g00003 304 CDD RRM1_PSRP2_like 102 181 - -
Stsc30712g00003 304 MobiDBLite consensus disorder prediction 281 304 - -
Stsc30712g00003 304 MobiDBLite consensus disorder prediction 284 304 - -
Stsc30712g00003 304 CDD RRM2_NsCP33_like 205 280 - -
Stsc30712g00003 304 Gene3D - 63 185 IPR012677 -
Stsc30712g00003 304 PANTHER OS02G0815200 PROTEIN 35 285 - -
Stsc30712g00003 304 MobiDBLite consensus disorder prediction 67 102 - -
Stsc30712g00003 304 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 101 179 IPR000504 GO:0003723
Stsc30712g00003 304 SMART rrm1_1 102 175 IPR000504 GO:0003723
Stsc30712g00003 304 SMART rrm1_1 205 278 IPR000504 GO:0003723
Stsc30712g00003 304 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 204 282 IPR000504 GO:0003723
Stsc30712g00003 304 SUPERFAMILY RNA-binding domain, RBD 97 178 IPR035979 GO:0003676
Stsc30712g00003 304 MobiDBLite consensus disorder prediction 68 94 - -
Stsc30712g00003 304 SUPERFAMILY RNA-binding domain, RBD 201 291 IPR035979 GO:0003676
Stsc30712g00003 304 Gene3D - 188 294 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30712g00003 Stsc-Chr30712 20316 22194 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30712g00003 101 299 Eukaryotic Initiation Factors Gene Family AT3G16380 27.638 2.31e-15 74.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30712g00003 - - gmx:100799014 422.935