Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30712g00002 ATGGCGAAGCAAAGTGTTTATCCTAATAAGGAACATGAAGGGATTGCTCACAATTCTTCAGGGCCCTGGTGGAGTCTCTTTGGATCTCAATCCGGGGAATCTTGTGGCCAAATGAAACCCTTTTCATTGGAGATTCCTAATTATGTTGACCGAATTGCCGGCGACAAGCAATCGGCGAGAGGAGCTGAAAACCTGTCTGGGAAAGGACATACAACTCAGTTTACCATCTTTCCAGAGGATTGTAAAATGTCAGGTGGTACACAAAAGCCTCAAGCAACCTTATCTCTGCAGTCACCACTTGCTGATACCCACACTGGATTCGAGCTAGGATTCAACCAGCCAATGATCTGTGCAAAATATCCATATGTGGATCAAATTTATGGGCTCTTCTCACCTTATGGACCTCAAATTTCGGGACGCATAATGCTACCACTTAGCATGACATCTGATGATGGACCAATTTATGTGAATGCTAAGCAGTACCATGGAATCATCAGACGTCGGCAGTCCCGTGCAAAAGCTGTACTTGATAACAAACTGACAAAACGTCGCAAGCCCTATATGCATGAATCTCGTCACCTCCATGCAATGCGGCGACCAAGAGGATGTGGCGGTCGCTTCTTGAACACAAAGAGCTCTGATGATGGAAATGATAAAACTAAAAGTGGAAGCAAGGTGCACAAAACTCATGGTGAACAGTTGCAATCTTGTGGCTCTCAGAGTTCTGAAGTGCTGCAATCTGAGGTTGGAACTCTGAATTCTTCCAAAGAGACTAATGGAAGCAGTCCAAATATTTCTGGATCAGAGGTGACTAGCATGTATTCTCGCGGAGGTCTCGATCATTTTGCTATCAGTCATCTCAGTTCTGCTGTCAGTGTCCACTCTCTAGCGGACATGATAGATGGCGGGCGGGGTATGGACATGATCATGCCCCCTAAATGGGTTGCAGCAGTTGGTGGTAACTGCTGCAACCTTAATGCTTGA 984 0.4573 MAKQSVYPNKEHEGIAHNSSGPWWSLFGSQSGESCGQMKPFSLEIPNYVDRIAGDKQSARGAENLSGKGHTTQFTIFPEDCKMSGGTQKPQATLSLQSPLADTHTGFELGFNQPMICAKYPYVDQIYGLFSPYGPQISGRIMLPLSMTSDDGPIYVNAKQYHGIIRRRQSRAKAVLDNKLTKRRKPYMHESRHLHAMRRPRGCGGRFLNTKSSDDGNDKTKSGSKVHKTHGEQLQSCGSQSSEVLQSEVGTLNSSKETNGSSPNISGSEVTSMYSRGGLDHFAISHLSSAVSVHSLADMIDGGRGMDMIMPPKWVAAVGGNCCNLNA 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30712g00002 327 SMART cbf3 149 210 IPR001289 GO:0003700|GO:0006355
Stsc30712g00002 327 MobiDBLite consensus disorder prediction 229 269 - -
Stsc30712g00002 327 MobiDBLite consensus disorder prediction 212 228 - -
Stsc30712g00002 327 Gene3D - 150 212 - -
Stsc30712g00002 327 ProSiteProfiles NF-YA/HAP2 family profile. 150 210 IPR001289 GO:0003700|GO:0006355
Stsc30712g00002 327 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 153 207 IPR001289 GO:0003700|GO:0006355
Stsc30712g00002 327 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 57 275 IPR001289 GO:0003700|GO:0006355
Stsc30712g00002 327 PRINTS CCAAT-binding transcription factor subunit B signature 153 175 IPR001289 GO:0003700|GO:0006355
Stsc30712g00002 327 PRINTS CCAAT-binding transcription factor subunit B signature 184 207 IPR001289 GO:0003700|GO:0006355
Stsc30712g00002 327 MobiDBLite consensus disorder prediction 198 269 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30712g00002 Stsc-Chr30712 15559 19852 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30712g00002 1 325 CCAAT-HAP2 Transcription Factor Family AT3G05690 44.602 8.28e-61 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Stsc30712g00002 CBFB_NFYA 7.9e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30712g00002 K08064 - gmx:100815382 465.692