Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30712g00001 ATGAATGATACCATCATTTATGATTTACGACCTTTATCTTTGTCTCTCTCTCTCTCCACTTTCTCACTGCGTAATGGTTCACGGACACTTCCGCGAATTGGCGCGTTCGCGTATCGGACACGTTTTGGACACGACATTCACAGACACTTGTTCGTAACCCAGCAGTGTCAAGATTACTGCAAACAAACGACCCAAGGAGTAAGGGCAATCCAGTCTCCAGTCATCAACAACAGTAACAATGAGGAAGTAATAGTGAAAACCATAAATAAGAGGAGGGTGAAACTGCAACTCATAATAGACCCCAGTTCAAGGAAAGCCACCTATAAGAAGAGGCGTGGTGGGTTGTTGAAGAAGATAGAGCAACTCTGCATCCTTTGTGGCATTCAGGCTTGCATTGTCATCTTTGGTCCAGGTGACACGAAGCCTACAGTGTGGCCATCGGTGGAAGAAGCTTCAAAGATTGTGCAAAAGTTTGAGGAGATTCCGGAGATGGAGCGGTTCAACAGAACTATAAGCCACCGGGAGTACAGACAACAAAGGATAATTTGA 549 0.4517 MNDTIIYDLRPLSLSLSLSTFSLRNGSRTLPRIGAFAYRTRFGHDIHRHLFVTQQCQDYCKQTTQGVRAIQSPVINNSNNEEVIVKTINKRRVKLQLIIDPSSRKATYKKRRGGLLKKIEQLCILCGIQACIVIFGPGDTKPTVWPSVEEASKIVQKFEEIPEMERFNRTISHREYRQQRII 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30712g00001 182 PRINTS MADS domain signature 110 125 IPR002100 GO:0003677|GO:0046983
Stsc30712g00001 182 PRINTS MADS domain signature 90 110 IPR002100 GO:0003677|GO:0046983
Stsc30712g00001 182 ProSiteProfiles MADS-box domain profile. 88 136 IPR002100 GO:0003677|GO:0046983
Stsc30712g00001 182 SUPERFAMILY SRF-like 90 180 IPR036879 GO:0003677|GO:0046983
Stsc30712g00001 182 Gene3D - 100 180 IPR036879 GO:0003677|GO:0046983
Stsc30712g00001 182 CDD MADS_SRF_like 90 169 IPR033897 GO:0000981|GO:0000987|GO:0045944
Stsc30712g00001 182 SMART madsneu2 88 147 IPR002100 GO:0003677|GO:0046983
Stsc30712g00001 182 PANTHER MADS BOX PROTEIN 92 160 - -
Stsc30712g00001 182 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 98 143 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30712g00001 Stsc-Chr30712 5740 15090 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30712g00001 88 181 Type I MADS-box Gene Family AT3G05860 39.362 3.84e-23 90.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Stsc30712g00001 SRF-TF 7.1e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30712g00001 - - adu:107487931 150.599