Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30708g00001 ATGGCTCCCAAAACCCGTTTCCAAGTGATTATGATGATCACTGTGTTCCTTCTTTCATCTTTATGCATCACTTCTTTCTCAGATAAACAAGCTGACTATCATTATGTCAAGAATTACCATAAAAGAAGCAAAGTAAAAGTTGTTGCAGGTGATGGTCCAGATATAAGGCTTAGGGATGCTGAGAGTAACAAAGTTAGAATAACGGTTAGTCAAGACGGTAGTGGTGACTTCAAGACCGTTACAGAAGCCGTCAATAGCACACCTCAATGGAACAATAGGAGAGTCATTGTATACATTGCACCAGGTATTTATAGGGAGAAGATAATGATCCCGAGAACACTGCCATTTGTTACATTGTTAGGAGATGCTAGTGATCCACCTACCATTACAGGGAATGATACAGCTTCTATCATCGGAAGAAATGGAAATCCAATTGGGACTTTCCAGAGTGCCACGGTTGCAGTCGATGCTAACTATTTTGTGGCAATCAACATCAAATTTGAGAACACAGCTCCACACTGGATTGGAATGAGAGGGGAACAAGCAGTCGCGCTTCGAATTTCGGGGACCAAAGCCGCATTTTACAACTGCACTTTCTATGGCTCTCAGGACACACTCTATGATCACAAAGGCCTTCATTACTTCAACAATTGCCTCATTCAAGGTTCTGTTGATTTCATCTTCGGCTCTGGCAGGTCCCTTTACGAGAACTGCTATCTTAATTCGACAACAAAGAAAGTGGCTTCCATAACAGCTCAAAAGCGTACAAATTCATCAGCGGAGAGTGGATTTTCTTTCAAGAACTGCACAGTGACAGGGAGTGGCCAAGTTTATCTTGGAAGAGCATGGGGCGATTATTCAACAGTTGTTTTCTCTTATACATTCATGGACAAAATTGTCATTTCAAAAGGATGGAGTGACTGGGGTGACCAAAAGCGCGACTTGAGAGTATATTATGGAGAATACAAGTGCAGTGGCCCTGGGGCTAATTTGACTGGAAGAGTGCCATGGGCAAGGATGCTTACAGATGAGGAGGCTAAGCCTTTTATTGGGATTCAATTCATTGAAGGAGATTCCTGGCTCATTAGCCCCTAA 1095 0.4265 MAPKTRFQVIMMITVFLLSSLCITSFSDKQADYHYVKNYHKRSKVKVVAGDGPDIRLRDAESNKVRITVSQDGSGDFKTVTEAVNSTPQWNNRRVIVYIAPGIYREKIMIPRTLPFVTLLGDASDPPTITGNDTASIIGRNGNPIGTFQSATVAVDANYFVAINIKFENTAPHWIGMRGEQAVALRISGTKAAFYNCTFYGSQDTLYDHKGLHYFNNCLIQGSVDFIFGSGRSLYENCYLNSTTKKVASITAQKRTNSSAESGFSFKNCTVTGSGQVYLGRAWGDYSTVVFSYTFMDKIVISKGWSDWGDQKRDLRVYYGEYKCSGPGANLTGRVPWARMLTDEEAKPFIGIQFIEGDSWLISP 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30708g00001 364 FunFam Pectinesterase 62 363 - -
Stsc30708g00001 364 Gene3D - 61 363 IPR012334 -
Stsc30708g00001 364 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 54 361 - -
Stsc30708g00001 364 ProSitePatterns Pectinesterase signature 2. 220 229 IPR033131 -
Stsc30708g00001 364 Pfam Pectinesterase 67 358 IPR000070 GO:0030599|GO:0042545
Stsc30708g00001 364 SUPERFAMILY Pectin lyase-like 65 361 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30708g00001 Stsc-Chr30708 3674 6302 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30708g00001 16 361 Carbohydrate Esterase AT5G47500 44.253 1.35e-99 297
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30708g00001 K01051 - qsu:112011696 530.02