Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30702g00001 ATGGCAGTTTCTCCTCCTCCAACAACCCACTCTTTGGAAGCTGAATTTGAAGCTCATAACTCTGAATCCCCACTCTTACAAATTGGAAATGATGGCCTCACTAAACGTGTTCTAAGGAAAGGTCTCTCTTGGCAAACTCCATTCTTTGGAGACCAAGTTGAAGTTCATTTCAAAGGACAAGTTGAAAATGGAGCATCTCTTGAATCCAGTTATGATAAAGGCTCCTCGTTTCGTTTCAAATTAGGCCAATGTGAAGTTATCAAAGGGTGGGATGAAGGAGTTGGGAGCATGAAGAAAGGGGAGAGAGCAATCTTCAGAATACCACCTAACTTAGCATATGGGGAAGAAGGTTCTCCACCATTTGTTCCTCCCAATGCGACTCTCGTTTTCGATATTGAATTGCTGTCTTGGAATGCCATTAGAGACTTGAATGGTGATGGAGGAATCATGAAAAAGATTCTAAAAGAGGGTGATGGATGGGCTACTCCTAAAGATATTGATGAAGTTCTAGTGAAATATGAAGCAAGGCTAGAGAGTGGGATGTGTGTGTCTAAATCTGAGCAAATTGTGGAATTTAATGTAGGTGAAGGATATATTTGTCCTGCCATGAGTGTAGCAGTTAAGACCATGAGAAAGGGTGAGGTGGCAGAGCTAGCTATCAAATTCTCATACGGAATCATTCAAAATTCAGATAGAACCAAGGAATCTGATGATTTTCTGCAGCCGAATTCTAAGATAACAACCATCAAACTAGAGTTAGTTTCATGGAAAATCGTGACTGATATCACAGGCGATAAGAAAATATTTAAGAAAATTAAGAAATCTGGCGAGGGGTTCGATCGTCCCAATGAAGGATCTCGTGTGAAAGTGATATATTCGTGTAAACAAGAAGATGGAACAATCATTCAGAAGAAAGGAACAGAGGAAGAACCTTTTGAATTCACAACTCAAGAAGGACAGGTGCCTGAGGGTCTAGAAAGAGCAATAATGACAATGAAAAAAGCAGAACAAGCTCTTGTGACCATAAGTGCTGAATATTTTAGTGACAACAATTTACAGGAAGAAGAAAAAGATACACCTAATAATAATAAAGTCCTTTATTATGAAGTTCAATTGGTTGATTTCGTTAAGGAGAAGCCATTTTGGAAGATGGAAAACAAAGAGAAATTAGAAGCTTGTGAGAGGAAGAAGCATGATGGGAATTTGATGTTTAAGGCTGAAAATTTCAAACGTGCATCAATGGAATATGAAAAGGCTGTAAAATGCATAGAATTTGATCATTCGTTCAGTGAAGATGAGAAGCTTCATGCAAACACGTTACGATTATCGTGTAATTTGAATAATGCTGCTTGTAAACTCAAATTGGGGGATTACACTGAAGCTTCCAGATTATGCACAAAGGTACTAGAACAAGATCCTTTAAATGTGAAGGCTCTATACAGAAGATGCCAAGCATATCTGAAAACATCAGATTTGGAGAAAGCTGAGGTTGATATTAAAAGAGCACTCATTATTGATCCAAATAACAGAGAGATTAAAGTTGAGTACAAAGAGCTGAAGCTCAAGCAGAAGGAATACAACAAATATGAATCCAACATCTTCAGCACAATGTTTTCAAGCATGAGCTAG 1629 0.3818 MAVSPPPTTHSLEAEFEAHNSESPLLQIGNDGLTKRVLRKGLSWQTPFFGDQVEVHFKGQVENGASLESSYDKGSSFRFKLGQCEVIKGWDEGVGSMKKGERAIFRIPPNLAYGEEGSPPFVPPNATLVFDIELLSWNAIRDLNGDGGIMKKILKEGDGWATPKDIDEVLVKYEARLESGMCVSKSEQIVEFNVGEGYICPAMSVAVKTMRKGEVAELAIKFSYGIIQNSDRTKESDDFLQPNSKITTIKLELVSWKIVTDITGDKKIFKKIKKSGEGFDRPNEGSRVKVIYSCKQEDGTIIQKKGTEEEPFEFTTQEGQVPEGLERAIMTMKKAEQALVTISAEYFSDNNLQEEEKDTPNNNKVLYYEVQLVDFVKEKPFWKMENKEKLEACERKKHDGNLMFKAENFKRASMEYEKAVKCIEFDHSFSEDEKLHANTLRLSCNLNNAACKLKLGDYTEASRLCTKVLEQDPLNVKALYRRCQAYLKTSDLEKAEVDIKRALIIDPNNREIKVEYKELKLKQKEYNKYESNIFSTMFSSMS 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30702g00001 542 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 166 257 IPR001179 GO:0003755
Stsc30702g00001 542 SUPERFAMILY FKBP-like 254 395 - -
Stsc30702g00001 542 SMART tpr_5 442 475 IPR019734 GO:0005515
Stsc30702g00001 542 SMART tpr_5 476 509 IPR019734 GO:0005515
Stsc30702g00001 542 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 285 376 IPR001179 GO:0003755
Stsc30702g00001 542 ProSiteProfiles TPR repeat profile. 476 509 IPR019734 GO:0005515
Stsc30702g00001 542 SUPERFAMILY FKBP-like 23 137 - -
Stsc30702g00001 542 SUPERFAMILY FKBP-like 143 225 - -
Stsc30702g00001 542 Gene3D - 258 378 IPR046357 GO:0003755
Stsc30702g00001 542 PANTHER PEPTIDYLPROLYL ISOMERASE 27 141 - -
Stsc30702g00001 542 FunFam Peptidyl-prolyl cis-trans isomerase 27 139 - -
Stsc30702g00001 542 SUPERFAMILY TPR-like 387 538 IPR011990 GO:0005515
Stsc30702g00001 542 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 50 138 IPR001179 GO:0003755
Stsc30702g00001 542 Gene3D - 8 141 IPR046357 GO:0003755
Stsc30702g00001 542 Coils Coil 325 345 - -
Stsc30702g00001 542 Pfam Tetratricopeptide repeat 453 508 - -
Stsc30702g00001 542 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 50 135 IPR001179 GO:0003755
Stsc30702g00001 542 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 281 373 IPR001179 GO:0003755
Stsc30702g00001 542 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 162 231 IPR001179 GO:0003755
Stsc30702g00001 542 Gene3D - 142 257 IPR046357 GO:0003755
Stsc30702g00001 542 Gene3D Tetratricopeptide repeat domain 379 536 IPR011990 GO:0005515
Stsc30702g00001 542 FunFam Peptidylprolyl isomerase 381 536 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30702g00001 Stsc-Chr30702 4794 7672 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30702g00001 26 541 Calmodulin-binding Proteins AT5G48570 53.920 0.0 551
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30702g00001 - - gmx:100785412 818.535