Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30701g00005 ATGTCTGAAGAGGCTGGGTCCATGTTGGTTGCTTATGATGATCCGTCTGAACAACGGTCACTATCTTTGGATGATACAAGCAGCACGGAGGAGTCGCCCGGCGAAACCAGGCTCTCCTTGGAAACAAATAATGATGCCATTCCGTATATCGGCCAAAGGTTTGCTACTCATGATGCTGCTTATGAATGCTATAGTGATTTTGCAAAGAGATGTGGGTTCTCAATTCGGCGTCACCGTACAGAGGGAAAAGATGGTGTTGGTAAAGGATTGACTAGACGTTACTTTGTTTGTCACCGTGCTGGAAACACTCCTGCCAAGACATCAACGGAAAGTAAGCCTCAACGAAATAGAAAGTCTTCTCGATGTGGATGCCAAGCTTACATGAGGATAAGCAAGACAACCGAATTTGGATCTCCAGAATGGCGGGTGACTGGTTTTGCCAACCACCATAATCATGAACTTTTAGAGCCAAACCAAGTTCGATTTCTTCCTGCATATAGAACTATTTCAGATGCTGACAAAAACCGAATCCTTATGTTTGCCAAAACAGGGATATCTGTTCACCAAATGATGAGGCTTATGGAACTTGAGAAGTGTGTTGAACCAGGATATTTGCCTTTTACGGAGAAGGATGTACGTAATTTACTCCAGTCATTTAGAAAATTGGATCCAGAAGAGGAAAGCTTAGATTTATTGAGAATGTGCCGCACTATAAAGGAGAAAGATCCTAATTTTAAATTTGAGTTTACACTCGATACAAATAACCGTTTGGAGAATATTGCTTGGTCCTATGCTTCATCAATCCAGTTGTATGATATATTTGGTGATGCCGTTGTTTTTGACACAACACACCGCCTAACCGCATTTGACATGCCACTTGGTATATGGGTTGGAATGAATAATTATGGAATGCCTTGCTTTTTTGGCTGTGTGCTTCTACGAGATGAAACCATGAGATCATTTTCCTGGGCACTTAAGGCTTTCTTAGGGTTTATGAATGGCAAGGCTCCGCAGACGATATTAACTGACCAAAATATCTGTCTCAAAGACGCAATATCTACAGAACTACCAGCAACAAAACATGCCTTCTGCATATGGATGATAGTGGCAAAGTTTCCGTCTTGGTTTAATGCTGTTCTTGGGGATCGCTACAATGAGTGGAAGGCTGAATTTTATAGACTTTATAATCTTGAGTCAATTGAGGAATTTGAACTAGGCTGGAGGGAAATGGTTTGTTTGTATGGACTGCATTCCAATCGGCACATGGTCAATTTATATAGCTCACGCTCCCTTTGGGCATTGCCATTTTTGAGAAGTCATTTTCTTGCAGGAATGACTACAACTGGTCAATCAAAGTCAATCAATGCGTTCATTCAACGTTTTCTGAGTGCACAGACCCGACTTGCACACTTTGTTGAACAGGTAGCTGTTGCTGTTGATTTTAAAGATCAAACTGGAGAACAACAAACGATGCAGCAGAATCTCCAAAATATCTGCCTCAAAACAGGAGCTCCCATGGAATCACATGCCGCTACAATCCTCACACCTTTTGCCTTTACAAAGCTTCAAGAGCAACTTGTGTTGGCTGCACACTATGCTTCTTTTCCAATTGAAGACGGTTTTCTTGTGAGGCACCACACAAAAGCTGAGGGCGGCCGGAAAGTTTATTGGGCTCCTCAGGAAGGAATTATAAGTTGTAGCTGCCATCAGTTTGAGTTCTCTGGAATTCTCTGTAGGCATTCTCTTAGAGTTCTTTCAACAGGAAATTGCTTTCAAATCCCAGATAGATATCTTCCCATCCGTTGGCGTCGAATCAGTATGCCCTCCTCTAAACTTGCTCAGTGTGCACCAAATGATCATACCGAAAGAGTTCAGTATTTACAAAATATAGTTTCGTCTCTGATTACAGAATCTGCAAAGTCTAAGGAACGATTAGATATTGCTACAGAACAAGTTTCCATCCTTCTGTCTCGCATTAGAGAGCAGCCAATTTCATTACAAGGTACCAGAGATTTCTCTTCCGTTAATAGAAATCTTTGA 2040 0.4167 MSEEAGSMLVAYDDPSEQRSLSLDDTSSTEESPGETRLSLETNNDAIPYIGQRFATHDAAYECYSDFAKRCGFSIRRHRTEGKDGVGKGLTRRYFVCHRAGNTPAKTSTESKPQRNRKSSRCGCQAYMRISKTTEFGSPEWRVTGFANHHNHELLEPNQVRFLPAYRTISDADKNRILMFAKTGISVHQMMRLMELEKCVEPGYLPFTEKDVRNLLQSFRKLDPEEESLDLLRMCRTIKEKDPNFKFEFTLDTNNRLENIAWSYASSIQLYDIFGDAVVFDTTHRLTAFDMPLGIWVGMNNYGMPCFFGCVLLRDETMRSFSWALKAFLGFMNGKAPQTILTDQNICLKDAISTELPATKHAFCIWMIVAKFPSWFNAVLGDRYNEWKAEFYRLYNLESIEEFELGWREMVCLYGLHSNRHMVNLYSSRSLWALPFLRSHFLAGMTTTGQSKSINAFIQRFLSAQTRLAHFVEQVAVAVDFKDQTGEQQTMQQNLQNICLKTGAPMESHAATILTPFAFTKLQEQLVLAAHYASFPIEDGFLVRHHTKAEGGRKVYWAPQEGIISCSCHQFEFSGILCRHSLRVLSTGNCFQIPDRYLPIRWRRISMPSSKLAQCAPNDHTERVQYLQNIVSSLITESAKSKERLDIATEQVSILLSRIREQPISLQGTRDFSSVNRNL 679
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30701g00005 679 Pfam MULE transposase domain 278 370 IPR018289 -
Stsc30701g00005 679 Pfam FAR1 DNA-binding domain 63 155 IPR004330 -
Stsc30701g00005 679 MobiDBLite consensus disorder prediction 1 43 - -
Stsc30701g00005 679 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 41 653 IPR031052 GO:0006355
Stsc30701g00005 679 Pfam SWIM zinc finger 560 587 IPR007527 GO:0008270
Stsc30701g00005 679 ProSiteProfiles Zinc finger SWIM-type profile. 553 589 IPR007527 GO:0008270
Stsc30701g00005 679 MobiDBLite consensus disorder prediction 21 43 - -
Stsc30701g00005 679 SMART 26again6 564 591 IPR006564 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30701g00005 Stsc-Chr30701 22236 25809 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Stsc30701g00005 MULE 7.1e-18 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30701g00005 - - gmx:100810717 1306.58