Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30701g00004 ATGGCCCCTGAAGTATTGAGGAATGAGCAGCTGGATGTTTCTGCTGATATATGGTCTTTGGGGTGTACAGTTATTGAAATGGCCACTGGAAGGTATCCTTGGGCCGGTGAGGTGTCGAATCCGGCAGCTTCTGTACTGAAGATTGCCAATGGCGACGAGATACCTCAACTTCCAACTCATTTCTCCAAGGAGGGTTTGGATTTCTTGACCAAGTGCTTGGAGAGAGACCCCAAAAAGAGGTTTACTGCTGAGGAGTTGCTTCACCATCCATTTCTGTCAAGGAGTTCAAGAAGACATTGTCAGCAAAGACAATATGCATTTTCACCAACAAGTGTTTTTGAGGTTCATGATTTTGAGGATGCTTGTGATGTTGATGATGATGATGAGTTAGAAAGTTCTCGAGGGCATGAGAAGTTCTCGATTAGAAACTCATTCTCGCGCCATGATCAACCAGTAGGAAGCACAGCATGGCAACAAGAAGACAGCACCCTATGGTCATCTGGGAGTTGGATTACTGTTAGGTCAGGGTAA 531 0.4539 MAPEVLRNEQLDVSADIWSLGCTVIEMATGRYPWAGEVSNPAASVLKIANGDEIPQLPTHFSKEGLDFLTKCLERDPKKRFTAEELLHHPFLSRSSRRHCQQRQYAFSPTSVFEVHDFEDACDVDDDDELESSRGHEKFSIRNSFSRHDQPVGSTAWQQEDSTLWSSGSWITVRSG 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30701g00004 176 Pfam Protein kinase domain 1 92 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30701g00004 176 Gene3D Transferase(Phosphotransferase) domain 1 1 151 - -
Stsc30701g00004 176 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 1 144 - -
Stsc30701g00004 176 SUPERFAMILY Protein kinase-like (PK-like) 1 102 IPR011009 -
Stsc30701g00004 176 ProSiteProfiles Protein kinase domain profile. 1 92 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30701g00004 Stsc-Chr30701 21264 22007 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30701g00004 1 92 MAP Kinase Kinase Kinase AT5G55090 54.348 7.46e-28 106
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Stsc30701g00004 Pkinase 8.2e-21 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30701g00004 K20716 - qsu:112028480 175.637