Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30700g00004 ATGAGAAAGGAGAAAGTGGAAGCAATACTGGGACCAGTGACATCAATGCAAGCAAGCTTTGTTGTGAATCTTGGAGACAAAGCTCATGTTCCCATAATATCCTTCACAGCAACAAGCCCTTCTCTAACTTCTCTCGGCAGTTCCTACTTCTTCCGAATCGCACAAAACGATTCTTCTCAAGTAGACGCCATTACGGACATCATCCAATTCTTTGCCTGGAGACAAGCAGTTCCTATCTACATCGACAACGACTATGGCCGCGCCATTATTCCTTTCTTAACCAATTCCCTTCAACAAGCTAACATTCGAGTCCCCTACCTCGCTGTTATATCTCCCTCCGCCACCGTTGATCAGATTGAAGAACAGCTTTACAAGCTTATGACCATGCAAACCAGGGTTTTCGTTGTTCACATGTTAAATAATCCCGGCTCTACTCTCTTCGCCATTGCAGATCGGATTGGAATGATGAGTGAAGGTTATGTTTGGATTGTGACTAATGGTATGGCCAATACTTTAGCCTCTCTCCACGCCTCTGAAATGGAAGCAATGCAAGGTGTCATAGGAGTGAAAACGTATGTTCCTAAAAGCAAGAGGATGGTTGATTTTCAGGCACGGTGGAAGAGAAGGTTTTTGCAGGAGAATCCATCAATGGTTGATGCCAACATCAATGTGTTTGGATTGTGGGCTTATGATGCCACAACCGCGCTGGCGAGCGCGGTTGAGAGGGCTAATAATAATAATACAAAATTAGGATTTGAAAATACTACTATAAATACTTCCAGTAATTTCAGTGACATCGACAAAGTAGGAGTATCTCATAGCGGTGAAGAATTGCGGGACGCTTTATCAGACACCAGATTCAGCGGCCTCGCCGGAGAATTCAGCCTTGTCGATGGGCAGTTGGATGCTACAACTTTTCAGATAATTAATGTAAATGGTAATGGAGAAAAGGTGATAGGATTTTGGACACCACAGATGGGATTAACAAGGAATCTTAGTAGTAGTAGTGGTTTGAATAATAATAATAATAATAATAATAATAATAATAATAATAATCTAGGAGCAATGATATGGCCAGGGGATAGTTATTCAGTACCAAAGGGATGGGAGATACCAACAAATGGGAAGAAATTGAGGATAGGAGTTCCGGTATCATCAAGGCCTCAATTTGTGAATGTTGAAATTGATGGTGAAACTAACACAACAAAGGTCACTGGTTTCAGCATCGATGTGTTTGAGGCAGTGGTGCAAGCTTTGCCTTATGCTCTGCCATGCCAACTCATTCCATTTGCAAAACCCAATGGAGAGATGGCCGGCACCTATGATGATTTGATCATGCAGGTGTTTGATGCTGTGGTGGGAGACACGACCATTATAGCAAACAGGTCAAAGTACGTTGACTTCACGCTGCCGTATACAGAATCAGGGGTATCAATGGTGGTGCCAGTGAAAGACAAGAGCAAGAAGGGCGCATGGGTATTCCTGAAGCCTCTCACATGGGATCTGTGGATGACTACTGGTTGTTCCTTCGTGTTCTTTGGATTCGTGGTGTGGGTTCTTGAGCACCGCATCAACAAAGATTTTCGTGGCCCTCCTTCTCACCAGATCGGCACCAGTTTGTGGTTTTCCTTCTCCACCATGGTCTTTGCTCATCGGGAGAAAGTAGTGAGCAACACTGCAAAGTTTGTTGTGATAATATGGGTATTTGTGGTGCTGATTTTGACTCAGAGTTATACGGCGAATTTGTCATCACTGCTAACAGTGGAGCAACTTCGACCAACGGTGACGAATGTGAATGATCTAATAAAGTATGGGACACGTGTCGGGTACCATAGAGGTTCTTTTATTCGTGGGATATTGCTGAACCTAGGTTTCAAGGATTTTCAGCTCGTAACTTATAATTCCACAGCACAATGTGATGATCTTCTCAGCAGAGGTAGTCAAAATGGTGGAATTGCTGCTGCCTTTGATGAAATCCCTTACATTAGGATCCTTCTTGGAACATATTGCTCTAAGTATGCCATGGTCGATCCCACATTTAAAACCGATGGCTTTGGCTTTGTATTCCCAAGAAATTCTCCTCTGGTGGCTGATGTTTCAAGGGCAATTCTAAAAGTAACGGAAGATCCAAGAATGAAAGAAATAGAAAATGCATGGTTTCAGAACCGAAGTAGTTGCCAAAAAGAAGATGCATCAGTGTCTTCTTCTAATAGTCTTGGCCTTGATAGCTTCTGGGGCCTGTTCCTCATTGCTGCTTTGGCTTCCATTTCAGCACTCCTCATCTTTTCAGCTACATTCTTGTATGATCATAGACATCAATGGTGGTTCATCAATAAGAACAATGATGATGATGAGAATAATAATAATCATCTATGGAAGACTCGAATCCGTGTCTTGCTGAGAATCTTCGACGAGAAAGACCCTAGGTCTCACAGATTCAGGAGAGGTAGTAATGATTATTCAATTAAGGAAGAAGAAGATAGAGAGAATAATCAAAGTAGCAGCACAATTATTGGCCCTCATTATCATCATCAGGATCATGATCATAGCTTAGGTGCTGCTTCAAGCTACACAGAATCGAGCTTCTCATTTCAGGGATCACCATGTGAAGACAATAATAATGTATAG 2628 0.4243 MRKEKVEAILGPVTSMQASFVVNLGDKAHVPIISFTATSPSLTSLGSSYFFRIAQNDSSQVDAITDIIQFFAWRQAVPIYIDNDYGRAIIPFLTNSLQQANIRVPYLAVISPSATVDQIEEQLYKLMTMQTRVFVVHMLNNPGSTLFAIADRIGMMSEGYVWIVTNGMANTLASLHASEMEAMQGVIGVKTYVPKSKRMVDFQARWKRRFLQENPSMVDANINVFGLWAYDATTALASAVERANNNNTKLGFENTTINTSSNFSDIDKVGVSHSGEELRDALSDTRFSGLAGEFSLVDGQLDATTFQIINVNGNGEKVIGFWTPQMGLTRNLSSSSGLNNNNNNNNNNNNNNLGAMIWPGDSYSVPKGWEIPTNGKKLRIGVPVSSRPQFVNVEIDGETNTTKVTGFSIDVFEAVVQALPYALPCQLIPFAKPNGEMAGTYDDLIMQVFDAVVGDTTIIANRSKYVDFTLPYTESGVSMVVPVKDKSKKGAWVFLKPLTWDLWMTTGCSFVFFGFVVWVLEHRINKDFRGPPSHQIGTSLWFSFSTMVFAHREKVVSNTAKFVVIIWVFVVLILTQSYTANLSSLLTVEQLRPTVTNVNDLIKYGTRVGYHRGSFIRGILLNLGFKDFQLVTYNSTAQCDDLLSRGSQNGGIAAAFDEIPYIRILLGTYCSKYAMVDPTFKTDGFGFVFPRNSPLVADVSRAILKVTEDPRMKEIENAWFQNRSSCQKEDASVSSSNSLGLDSFWGLFLIAALASISALLIFSATFLYDHRHQWWFINKNNDDDENNNNHLWKTRIRVLLRIFDEKDPRSHRFRRGSNDYSIKEEEDRENNQSSSTIIGPHYHHQDHDHSLGAASSYTESSFSFQGSPCEDNNNV 875
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30700g00004 875 CDD PBP1_GABAb_receptor_plant 1 330 IPR044440 -
Stsc30700g00004 875 MobiDBLite consensus disorder prediction 811 875 - -
Stsc30700g00004 875 FunFam Glutamate receptor 377 491 - -
Stsc30700g00004 875 Gene3D - 379 490 - -
Stsc30700g00004 875 SMART GluR_14 379 722 IPR001320 GO:0015276|GO:0016020
Stsc30700g00004 875 MobiDBLite consensus disorder prediction 811 831 - -
Stsc30700g00004 875 SUPERFAMILY Periplasmic binding protein-like I 2 370 IPR028082 -
Stsc30700g00004 875 PIRSF IGluLR_plant 1 864 IPR017103 -
Stsc30700g00004 875 MobiDBLite consensus disorder prediction 851 875 - -
Stsc30700g00004 875 Pfam Ligand-gated ion channel 722 754 IPR001320 GO:0015276|GO:0016020
Stsc30700g00004 875 Gene3D - 58 223 - -
Stsc30700g00004 875 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 8 789 IPR015683 -
Stsc30700g00004 875 FunFam Glutamate receptor 271 376 - -
Stsc30700g00004 875 Pfam Bacterial extracellular solute-binding proteins, family 3 400 721 IPR001638 -
Stsc30700g00004 875 FunFam Glutamate receptor 491 621 - -
Stsc30700g00004 875 FunFam Glutamate receptor 56 211 - -
Stsc30700g00004 875 Gene3D - 671 728 - -
Stsc30700g00004 875 Gene3D - 491 617 - -
Stsc30700g00004 875 CDD GluR_Plant 376 720 - -
Stsc30700g00004 875 Gene3D - 263 378 - -
Stsc30700g00004 875 Pfam Receptor family ligand binding region 4 314 IPR001828 -
Stsc30700g00004 875 FunFam Glutamate receptor 2.7 628 728 - -
Stsc30700g00004 875 SUPERFAMILY Periplasmic binding protein-like II 354 721 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30700g00004 Stsc-Chr30700 35053 38481 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30700g00004 1 817 Ion Channels AT2G29120 50.547 0.0 814
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30700g00004 K05387 - qsa:O6P43_019170 1039.25