Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30700g00003 ATGGTAGCGAAGAATAATCAGGCTCCTACCACCTTGGTTGTGATTCTGAGTCTACTCTGGTGGTGGCTTTTTGGTGTGGTAGCAACAGTGATGGCTCAAAGTAACCACGGTACAACAACAAGAGTAGTGAAAGTAGGAGCGGTTCTTGATGTTGGTGGAGGAGGAATGGTTGGAAAGATGGGTTTGAACAGCATCACAATGTGTATCAATGATTTCTATGTCTCAAATCCTCATTACAAAACCAGGCTCCAACTTATCCTTAGAGACTCCCAAAGAGACCTTGTTACTGCTGCTGCTCAAGTTGTAGATCTCATAAAGAAAGAGCAAGTGGAAGCTGTGATGGGACCAGTTACAACAATGGAAGCCATGTTTGTGATCAACCTCGGAGACAAAGCTCACGTGCCTATTCTCACCTTCTCTGCAACCTGCTCTTCTCTCTCATCACTCCACACACCATATTTCTTCCAAATTGCACAGCAGGACACAACTCAGGTAGAAGCCATAAGCTCCATTATCCAAGCTTTTGGATGGAAAGAAGTGGTTCCAATTTATGTGGACAACACTTATGGTCAAGGACTCATTCCATCCCTTACCAATTCACTTCAGAAAGCTTACATCCGTGTTCCTTATCTCACTCCCGTTGATTACTCAGCTTCAGATGATGCCATTGAAAAAGAGCTCTACAAGCTCATGACTATGCAAACCAGAGTCTTTGTTGTTCACATGACACCTCCTCTTGGCACTCGCCTATTCTCCATTGCTAAAACCATTGGCATGATGGATCAAGGTTATGTTTGGATTCTCACTGATGGAATGGCCAATTTCTTCAACTCATTGGACTCTTCAGTTATGGAATCCATGGAAGGTGTGTTGGGTGTTAGGCCTTATATTCCAAGAACTAAACAGCTTCTTGATTTTAGAGCAAGATGGAAAAGACACTTCCTGAGAGACAATCCAACACTTGTTGATATCAATCTCAATGCTCTTGGAATATGGGCCTATGATGCTACCACTGCCTTGGCCATGGCCGGACTAATTAGAAATATGGATGACAAAAATTCAACAATAACTGCATATTCAACTTCCAAGGAGAATCTAGGAACAATTATATGGCCAGGGGACTCTTACTCTGTTCCAAAGGGGTGGCAGATTCCCACAAATAGTATCAAGTTAAAGATAGGGGTTCCAGTGAAAGCTTGTGGCTACACCGAATTTGTGAAAATAATCCATGACCCTGTTACCAATTCTACAAAGGTCAGTGGGTTCTGCATTGATGTCTTCAATGCTGTGGTAGAAGCGTTGCCTTATGCCCTTCCATTTCAATTCATTCCATTTGAAAAGTCCAATGGTGAGATGGCAGGAACGTATGATGATTTGATCTCCCAAGTTTATTATGGGAACTTTGATGCTGTGGTGGGGGATACAACAATTACAGCAAATAGGTCAAGTTATGTTGATTTCACATTGCCATACACAGAATCTGGTGTGACTATGGTTGTTCCAATAAGAGACAACAGAAAGAAGAATGCATGGGCCTTCTTGAAGCCATTGACATGGGACCTTTGGGTTACAACATTTTGTACATTTGTATTCATAGGATTTGTTGTTTGGGTACTTGAACACCGAATCAACAACCATTTCAGAGGGCCTCTGCCTTATCAAATTGGCACTAGCTTATGGTTTTCCTTCTCAACCATGGTGTTTTCTCATCAGGAGAAAGTAGAGAGCAACTGTGGAAGATTTGTGGTGATAGTATGGGTTTTTGTGGTTCAAATTCTTGTTCAAAGCTACACTGCAAGCCTTACCTCTCTCTTAACAGTTGAACAACTAAACCCAGCAAATACTGATGTTTATCAACTTTTAAGGAATCAGTTGAATGTTGGTTATCTGGAAGGTTCTTTTGTTCGTGGAATCTTGAAGGACATGGGGTTCAAGGATGAGCAGCTCAAGGTTTATAATTCCGTAGAAGAATGCAACGATCTCTTCACAAAAGGAAGCGCCAATGGAGGCATCGATGCGGCGTTCGACGAAGTCCCCTACGTGATGCACCTCCTTGGGACTTATTGTTCCAAGTATGCCATGGTTGAGCCAAGATTTAAAACCGGTGGCTTTGGCTTTGTGTTTCCGAAAGGGTCGCCTCTTGTGGGAGACATATCAAGGGCAATATTGAATGTGAGTGAAGGATCCAAAATGAGAAGAATTGAGAATGCATGGTTGAATGGAAGCAGTAGTTGTATCAATAATAATGCACAAGTATCTTCTTCTACGAGCCTAGGACTCGAAAGCTTCTGGGGTCTGTTCTTGGTTGTAGGTGTTTCGTGCATATTAGCACTCATAATCTTTTTAGCCACATTCCTATATCAGCATAGAGATATTATTTTGTCAAACCATGATCGTTCCCATAGTTCGTTAAAAAGACGGATTGGAACGTTGCTAACGACCTTCAATGAGAGAGACTTGAGTTCACACACTTTCAAGAAAAGTGACTCAAGTGTGACGTGTAGTCCTAAGTCAGCATCAGCAAGTATAAATTGCCCTCCAATTAGTCCATCTAGTTACACAGAATCAAACTTCTCGGTCAGTCCAGATCCACATCGTTATTATGCTACTCATCATCAACACAAAGCTACACATGAACATGCTCCCATTACAAACCGCACAGATGCCAACTTTCAAGTCACATAG 2685 0.4205 MVAKNNQAPTTLVVILSLLWWWLFGVVATVMAQSNHGTTTRVVKVGAVLDVGGGGMVGKMGLNSITMCINDFYVSNPHYKTRLQLILRDSQRDLVTAAAQVVDLIKKEQVEAVMGPVTTMEAMFVINLGDKAHVPILTFSATCSSLSSLHTPYFFQIAQQDTTQVEAISSIIQAFGWKEVVPIYVDNTYGQGLIPSLTNSLQKAYIRVPYLTPVDYSASDDAIEKELYKLMTMQTRVFVVHMTPPLGTRLFSIAKTIGMMDQGYVWILTDGMANFFNSLDSSVMESMEGVLGVRPYIPRTKQLLDFRARWKRHFLRDNPTLVDINLNALGIWAYDATTALAMAGLIRNMDDKNSTITAYSTSKENLGTIIWPGDSYSVPKGWQIPTNSIKLKIGVPVKACGYTEFVKIIHDPVTNSTKVSGFCIDVFNAVVEALPYALPFQFIPFEKSNGEMAGTYDDLISQVYYGNFDAVVGDTTITANRSSYVDFTLPYTESGVTMVVPIRDNRKKNAWAFLKPLTWDLWVTTFCTFVFIGFVVWVLEHRINNHFRGPLPYQIGTSLWFSFSTMVFSHQEKVESNCGRFVVIVWVFVVQILVQSYTASLTSLLTVEQLNPANTDVYQLLRNQLNVGYLEGSFVRGILKDMGFKDEQLKVYNSVEECNDLFTKGSANGGIDAAFDEVPYVMHLLGTYCSKYAMVEPRFKTGGFGFVFPKGSPLVGDISRAILNVSEGSKMRRIENAWLNGSSSCINNNAQVSSSTSLGLESFWGLFLVVGVSCILALIIFLATFLYQHRDIILSNHDRSHSSLKRRIGTLLTTFNERDLSSHTFKKSDSSVTCSPKSASASINCPPISPSSYTESNFSVSPDPHRYYATHHQHKATHEHAPITNRTDANFQVT 894
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30700g00003 894 CDD GluR_Plant 390 739 - -
Stsc30700g00003 894 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 43 824 IPR015683 -
Stsc30700g00003 894 FunFam Glutamate receptor 2.7 647 747 - -
Stsc30700g00003 894 SUPERFAMILY Periplasmic binding protein-like II 367 740 - -
Stsc30700g00003 894 SUPERFAMILY Periplasmic binding protein-like I 41 343 IPR028082 -
Stsc30700g00003 894 Gene3D - 162 391 - -
Stsc30700g00003 894 SMART GluR_14 390 741 IPR001320 GO:0015276|GO:0016020
Stsc30700g00003 894 Pfam Receptor family ligand binding region 70 343 IPR001828 -
Stsc30700g00003 894 Pfam Bacterial extracellular solute-binding proteins, family 3 415 740 IPR001638 -
Stsc30700g00003 894 Gene3D - 392 509 - -
Stsc30700g00003 894 FunFam Glutamate receptor 510 640 - -
Stsc30700g00003 894 Gene3D - 510 639 - -
Stsc30700g00003 894 Gene3D - 646 747 - -
Stsc30700g00003 894 MobiDBLite consensus disorder prediction 871 894 - -
Stsc30700g00003 894 FunFam Glutamate receptor 160 315 - -
Stsc30700g00003 894 CDD PBP1_GABAb_receptor_plant 44 369 IPR044440 -
Stsc30700g00003 894 FunFam Glutamate receptor 390 510 - -
Stsc30700g00003 894 Pfam Ligand-gated ion channel 741 773 IPR001320 GO:0015276|GO:0016020
Stsc30700g00003 894 PIRSF IGluLR_plant 13 358 IPR017103 -
Stsc30700g00003 894 PIRSF IGluLR_plant 343 879 IPR017103 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30700g00003 Stsc-Chr30700 10276 14573 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30700g00003 346 855 Ion Channels AT2G29120 50.775 6.13e-167 509
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30700g00003 K05387 - qsa:O6P43_019170 662.529