Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc306g00005 ATGAATCTGCAGAAGACCCAGCTTAATTACAAAACCCCGCCTCCTTCTTATGAAGAAATCAGTAGTGATAGCTTGTTAAGGGAGAATGATGGTGGAAGGAGAGGGAAGGGTGTGCCAAGGACCAAAATAGAGTTACCAAGAGTGAAGAAGATTCATCAACCAAAGGAGAAGGGGAAGGTTAAAAAGACTCCTACCAAGAAGAGTAAGGATGCAGATGGGCATAACGGAACCGGCAGCGAGTCCGTCTACGGCACCAAGTTTGCGGACGAGAATTTCAAAAAGAAAATCACCGGACCTAGCATCCTGTCGACGGCAAATGCGAGTCCGAACACGAACGAATCTCAGTTCTTCGTCTGCACGGCGAAGACGGAATGGCTGGATGGGAAGCACGTTGTGTTCGGGCAGGTGGTTGAAGGCAAGGATGTCGTGAGGGAGAATGAGAAGGTCGGGTCCGACTCCGGCAGGACGTCAAAGCCGGTGGTGTCGCCGACTGCCGTCAATTATTATTATTATTATTATTATTATTATTATGGGTGGGTTTGGTAA 546 0.4817 MNLQKTQLNYKTPPPSYEEISSDSLLRENDGGRRGKGVPRTKIELPRVKKIHQPKEKGKVKKTPTKKSKDADGHNGTGSESVYGTKFADENFKKKITGPSILSTANASPNTNESQFFVCTAKTEWLDGKHVVFGQVVEGKDVVRENEKVGSDSGRTSKPVVSPTAVNYYYYYYYYYYGWVW 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc306g00005 181 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 71 160 IPR002130 GO:0000413|GO:0003755
Stsc306g00005 181 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 70 161 - -
Stsc306g00005 181 Gene3D - 57 163 IPR029000 -
Stsc306g00005 181 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 128 143 IPR002130 GO:0000413|GO:0003755
Stsc306g00005 181 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 100 115 IPR002130 GO:0000413|GO:0003755
Stsc306g00005 181 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 115 127 IPR002130 GO:0000413|GO:0003755
Stsc306g00005 181 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 75 159 IPR002130 GO:0000413|GO:0003755
Stsc306g00005 181 SUPERFAMILY Cyclophilin-like 71 163 IPR029000 -
Stsc306g00005 181 MobiDBLite consensus disorder prediction 1 83 - -
Stsc306g00005 181 MobiDBLite consensus disorder prediction 1 19 - -
Stsc306g00005 181 MobiDBLite consensus disorder prediction 23 51 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc306g00005 Stsc-Chr306 20251 23377 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc306g00005 76 152 U-box Gene Family AT5G67530 43.590 7.72e-10 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc306g00005 K01802 - ming:122074517 148.288