Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc306g00003 ATGGAAAGAGGGTTTGATAGAAGGTACATAAAGAAAGGACCGTGGAGCAGAGAGGAAGATGAGGTGCTCCAAGAGCATGTTAGCAAGTATGGTCCAAGAGATTGGAGCTCCATTCGATCCAAAGGCTTGTTGCCACGAACTGGAAAATCTTGTCGCCTTAGATGGGTTAACAAGCTTAGACCAAACTTGAAGATTGGGTGCAAGTTTACTGAAGAAGAGGAGAGGTTGGTGATAGAGTTACAAGGGCAATTTGGAAACAAATGGGCAAAGATTGCTACATATTTGGAAGGAAGAACAGACAACGATGTAAAGAATTTCTGGAGCAGCAGGAGAAAGAGGTTAGAGAGGATGTTGCGGAGGCCATCAATAACTTCTTCAAAGATGCAACACAAAAACAAAGGAAAAGCCCCTCTTACCCTTACTCTTACTCAAGTACAATTTGAAGAGGATATTTCATGCAGCTCCAATAAGCCAGAGGAAAATGTCCCCTGTGGAAACTACCTTCCTTATTACCCTGCTCCCTATATGGGAAACAATGAAGAGTTCAAAATGGTGAACCTACCAGATTTGACAAAACCAAACTACCAAAATTTGGAAAGTGACCTCAACACTTGTTCTCAGGTTGTTGAGGCCACCCCACTTCATCTGGTACCTTCTTTTGAGTCTTCAACAACAGAGTACACTTTCCCCCAAATCCCTAATGAACCCCAAATGGAATTTCCACTGTTTCCAGAACCAGTTGATGACCCTTACTTCTTTGATGTGCTTGAGCAGAAAAAGTGTTCAGAAGAATATGTATGCAGCCATCAGAACAAGATTGGAACAACTCTTGGATTGGATGGAAAGCCTCAAAGTGAAAGTGCTAAGTGCTTATTTGAGGACATCCCAACTGAGATCTTTGAATATTTTGATCATACTCCAACCTCATCAGACCAATAA 939 0.4185 MERGFDRRYIKKGPWSREEDEVLQEHVSKYGPRDWSSIRSKGLLPRTGKSCRLRWVNKLRPNLKIGCKFTEEEERLVIELQGQFGNKWAKIATYLEGRTDNDVKNFWSSRRKRLERMLRRPSITSSKMQHKNKGKAPLTLTLTQVQFEEDISCSSNKPEENVPCGNYLPYYPAPYMGNNEEFKMVNLPDLTKPNYQNLESDLNTCSQVVEATPLHLVPSFESSTTEYTFPQIPNEPQMEFPLFPEPVDDPYFFDVLEQKKCSEEYVCSHQNKIGTTLGLDGKPQSESAKCLFEDIPTEIFEYFDHTPTSSDQ 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc306g00003 312 SMART sant 65 113 IPR001005 -
Stsc306g00003 312 SMART sant 11 61 IPR001005 -
Stsc306g00003 312 FunFam MYB transcription factor 12 64 - -
Stsc306g00003 312 Pfam Myb-like DNA-binding domain 15 64 - -
Stsc306g00003 312 PANTHER TRANSCRIPTION FACTOR DUO1 6 311 - -
Stsc306g00003 312 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 60 115 IPR017930 -
Stsc306g00003 312 Pfam Myb-like DNA-binding domain 68 108 IPR001005 -
Stsc306g00003 312 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 7 55 IPR017930 -
Stsc306g00003 312 Gene3D - 11 64 - -
Stsc306g00003 312 SUPERFAMILY Homeodomain-like 10 107 IPR009057 -
Stsc306g00003 312 CDD SANT 68 107 IPR001005 -
Stsc306g00003 312 CDD SANT 14 59 IPR001005 -
Stsc306g00003 312 FunFam Transcription factor GAMYB 67 138 - -
Stsc306g00003 312 Gene3D - 68 138 - -
Stsc306g00003 312 ProSiteProfiles Myb-like domain profile. 7 59 IPR001005 -
Stsc306g00003 312 ProSiteProfiles Myb-like domain profile. 68 111 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc306g00003 Stsc-Chr306 10441 12824 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc306g00003 10 308 MYB Transcription Factor Family AT3G60460 40.606 6.11e-65 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Stsc306g00003 Myb_DNA-bind_6 2.6e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc306g00003 K09422 - gmx:100793689 353.984