Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30693g00003 ATGGAAGATCCACTAAAGGATGATGAACAAAACTTGTCACAGTCTAAAAGACTCAGTGATTCAATTTCTATTCCCATGAATTCTGTATATTCTCATGGGAATGACACCACAGCTATAGAACATTGTGAACTAGACAACCACATTCATCAAATTCAAGATTCTGTAAATTGCAGAAAGAAGAATTTGATGTTGGATAACAAAAATGAGGAATTAAAGAATAGTCCCCAGTGCTGCAATAATGCTAAGGGCTTGGTTACAAGATTGTCCTCATTCACATATTCACACATTCCTGGAGTTATAAATCCTCATGATAAAGCCATACAACGGTGGAACAGATTCTTTATCATTGCTTGTTTGGTGGCAATTTTTGTAGACCCTTTGTTTTTCTTCTTGCTGTCAACGGATAAGAGACTTAGCTGCATAGACATTGAGTTGGCTAGTAGTGTCACCACACAAGCAATTGTAACTTTAAGAAGCATGACTGATATTGTATACTTCCTACATATGCTTCTCCAGTTTAGGTTAGCTTTTGTAGCTCCTGAGTCTAGAGTGGTAGGTGCTGGAGAAGTGGTTGATGATCCAAAGAAAATTGCAATAAATTACCTTACTGGATATTTTGTTATTGATATGTATAATGTGATTCCCCTTCCTCAGATTATTATACTACTTGTGCTACCAAAATCTTTTGATTCTTCTAGTACTAGATCAGGAGCTAATTTTGCAAAGAATATGTTAAGAATTTCTATGGTTGTACAATACCTACCCAGACTATGCCGGTTTGTTTCTCTACTGGCGGGGCGGACTCCTGTCGGTTTCATCTTCGAGTCGGCATGGGGGAACTTCGTTATCAATCTTTCTATGTTCATGCTGTCTGCTCATGTTGTGGGTTCATGCTGGTATCTCTTCGGTTTGCAGAGAGTTAACCAATGTCTTAGAAATGCATGCCACACCATCAACCTTAAAGAATGCATGAGATTTGTAGATTGCGGGTACAAAAGCAGTTTCAACTCTGATCCGGATTGGCGAGTCTGGGCGGAAAATTCCACAGCTAACGGTTGCTTTACCACAAGTGGTTTCCCCTATGGAATCTATGCTCAAGCTGTTCAACTTACCACAGAAAGTTTTATAAACAAATATATTTATTCTTTGTTCTGGGGATTCCAGCAAATAAGCACTCTAGGTGGAAATCAAACTCCAAGTTACTTCGTTTGGGAAGTTCTTTTCACCATGGCTATCATTGGTCTAGGCCTGCTTCTCTTCGCTCTTCTCATTGGAAATATGCAGCAATTTCTTCAGGCTCTTGGACAGAGGAGATTGGAAATGTCATTAAGGCAACGAGATTATGAACGGTGGATGGCTCATCGATGCTTGCCGGAAGAATTAAGAAGGCAAGTAAGGAGTGCTGAACGGTATAACTGGTTTGCCACTAGAGGAGTAAATGAGGAACTTCTTTTGGAGAATCTTCCTGAAGAACTTCAAAGAGATATAAGGCGTCATCTCTTCAAATTTGTTAAGAAAGTTCGAATTTTTTCCATGATGGATGATCAACTCATAGATGCTATCTGTGAGAGGCTAAAGCTGAAGATATTCATTGAAGAAAGCACAATTCTGTACCCTGGTGGTCCTATTGAAAAGATGATCTTCATCATACGCGGAAATCTGAAGAGCACTGAGGATAAAACTACGGTCTCTTTATCCGAAGGAGATGTTTGTGGCGAGGAACTTCTCACATGGTGCCTAGAAAAGTATTCAGTGAACAAAAATGTGAGAAAAATGAGGATTGCCGGTCGGAGACTGCTGAGCAACAGAACAGTTAGATGCATAACTAATGCAGAAGCATTTTCTCTGCAACTTGCAGATCTTGAAGAGGTTACTATTCTTTTTGCGAGATTTTTGCGGAATCCACATGTTCAAGGAGCTATCAGGTATGAATCACCATATTGGAGGGCCTTTGCAGCAAAATGCATTCAAGTAGCATGGAGATACTGGAAGAGGCGTCAACAACGGAAGCTTTCATCAATACTCAAACCTTCAACAAAATAG 2043 0.3975 MEDPLKDDEQNLSQSKRLSDSISIPMNSVYSHGNDTTAIEHCELDNHIHQIQDSVNCRKKNLMLDNKNEELKNSPQCCNNAKGLVTRLSSFTYSHIPGVINPHDKAIQRWNRFFIIACLVAIFVDPLFFFLLSTDKRLSCIDIELASSVTTQAIVTLRSMTDIVYFLHMLLQFRLAFVAPESRVVGAGEVVDDPKKIAINYLTGYFVIDMYNVIPLPQIIILLVLPKSFDSSSTRSGANFAKNMLRISMVVQYLPRLCRFVSLLAGRTPVGFIFESAWGNFVINLSMFMLSAHVVGSCWYLFGLQRVNQCLRNACHTINLKECMRFVDCGYKSSFNSDPDWRVWAENSTANGCFTTSGFPYGIYAQAVQLTTESFINKYIYSLFWGFQQISTLGGNQTPSYFVWEVLFTMAIIGLGLLLFALLIGNMQQFLQALGQRRLEMSLRQRDYERWMAHRCLPEELRRQVRSAERYNWFATRGVNEELLLENLPEELQRDIRRHLFKFVKKVRIFSMMDDQLIDAICERLKLKIFIEESTILYPGGPIEKMIFIIRGNLKSTEDKTTVSLSEGDVCGEELLTWCLEKYSVNKNVRKMRIAGRRLLSNRTVRCITNAEAFSLQLADLEEVTILFARFLRNPHVQGAIRYESPYWRAFAAKCIQVAWRYWKRRQQRKLSSILKPSTK 680
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30693g00003 680 ProSiteProfiles cAMP/cGMP binding motif profile. 509 576 IPR000595 -
Stsc30693g00003 680 SUPERFAMILY Voltage-gated potassium channels 102 437 - -
Stsc30693g00003 680 Pfam Ion transport protein 109 437 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Stsc30693g00003 680 CDD CAP_ED 509 624 IPR000595 -
Stsc30693g00003 680 Gene3D - 112 430 - -
Stsc30693g00003 680 Gene3D Helix hairpin bin 431 501 - -
Stsc30693g00003 680 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 80 671 - -
Stsc30693g00003 680 Gene3D Jelly Rolls 507 630 IPR014710 -
Stsc30693g00003 680 SUPERFAMILY cAMP-binding domain-like 437 626 IPR018490 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30693g00003 Stsc-Chr30693 10868 17066 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30693g00003 79 589 Ion Channels AT3G17700 59.649 0.0 611
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30693g00003 K05391 - jre:109012085 807.364