Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30690g00002 ATGTTTGAGAACATGAACAAACAATTATTGGATGCAATGTGTGATACACTGAAGCCAGTTCTTTACACCGAGAAGAGCTACATTGTTTGTGAACAAGATCCGGTGGACGAAATGCTCTTCATTATGCGCGGAAACCTCCAAACCGTCACTACAAACGGCGGCAGAACAGGTTTCTTCAACTGCTTTGAGCTCAAGCCTGGTGACTTCTGTGGAGAAGAGCTTCTGACATGGGCCTTGGATCCAAATTCCCCACCAAATCTTCCAATTTCAACAAGAACTGTTGAAACCATAACTGAAGTTGAAGCTTTTGCGCTCACTGCTGATGACTTGAAGTCTGTTGCTTCACAGTTTCGTCGCATTATAACCAGCAAACAACTCCAGCACACTTTCAGATTCTACTCCTTACAATGGAAGACATGGGCAGCATGTTTCATCCAAGCAGCATGGCGCAGATACCGGAAGAGGAAAGCACTGAAGGCATTATATGAATCTGAAGAGGTTCAATCTTTTGGAATTGAGGATGGATATAGCAACAGTTGCTCATCATCATCACCAAGCTTTGTTGCCACAGTTTATGCACAACGGTTTGCAGCCAATGCTCTTAGAACCATAAGAAGTGGCAAACGCAGCAACAAGGTTTCGCCGCCGACACAGAGGTTACTACCGCTTCTGCCTCAGAAACCGGCTGAACCGGATTTCACCTCTGAGAAGAATTAG 717 0.4505 MFENMNKQLLDAMCDTLKPVLYTEKSYIVCEQDPVDEMLFIMRGNLQTVTTNGGRTGFFNCFELKPGDFCGEELLTWALDPNSPPNLPISTRTVETITEVEAFALTADDLKSVASQFRRIITSKQLQHTFRFYSLQWKTWAACFIQAAWRRYRKRKALKALYESEEVQSFGIEDGYSNSCSSSSPSFVATVYAQRFAANALRTIRSGKRSNKVSPPTQRLLPLLPQKPAEPDFTSEKN 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30690g00002 238 Gene3D Jelly Rolls 1 119 IPR014710 -
Stsc30690g00002 238 MobiDBLite consensus disorder prediction 207 238 - -
Stsc30690g00002 238 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 1 233 - -
Stsc30690g00002 238 FunFam Cyclic nucleotide-gated ion channel 1 1 117 - -
Stsc30690g00002 238 Pfam Cyclic nucleotide-binding domain 21 116 IPR000595 -
Stsc30690g00002 238 ProSiteProfiles cAMP/cGMP binding motif profile. 1 113 IPR000595 -
Stsc30690g00002 238 ProSiteProfiles IQ motif profile. 138 166 IPR000048 GO:0005515
Stsc30690g00002 238 SMART cnmp_10 1 132 IPR000595 -
Stsc30690g00002 238 CDD CAP_ED 1 133 IPR000595 -
Stsc30690g00002 238 SUPERFAMILY cAMP-binding domain-like 1 119 IPR018490 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30690g00002 Stsc-Chr30690 20556 22335 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30690g00002 1 236 Ion Channels AT5G53130 66.807 1.35e-97 298
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30690g00002 K05391 - gmx:100795201 316.62