Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30690g00001 ATGTCAATCTCTGTGGACCCTCTTTTCTTTTATATCCCAGTGATCAATGAAGAGTTAAAATGCCTTAGTTTGAATAGAAACCTAAAGATTACTGCATGTGTTCTTCGCACATTCTTTGATCTCATCTACATTCTTCACATCATATTTCAGTTTGGAACCAGGTTCATTCTCCCTTCTACTAATGTGCCTAGAACAGGTGTGCTGATTGGCAACATTAGTACTATAGTGAGGAGATACTTAGGTTCTCATTTCATCATTGACATTCTATCAATCATTCCACTTCCACAGATGGTCACCTTAGCTATCATTCCAATCCCAAATTGCTCAGTTCCATACGTAGCAAAGAACTTGCTGAAGTACACAATAATAGTTCAGTATGTGCCAAGAGTTTTGCGACTCTATCTATTATTCAAAGAAGTAACCAGAACTTATGGCATAATGACCAAGACAGCATGGTCAGGAGCAGCCTTTAATCTTTTCATTTACATGCTAGCAAGTCATGGAATTGGAGCTTTTTGGTATCTACTTTCAGTAGAATCAGAGGTTCGATGTTGGCAGAAACACTTGAAGCATACTAAATTCTCCACTTCATCCTACCTCAGCTGTGGACAACACTACAAGCAAGATGTTCTGTCACTTATGAATACTTCAACATGCCCTCATGTTGATCCTGATAATAGTACAGATACATCAGGTTTCAATTTTGGAATTTTTGCACCAGCTTTACAATCTCGTGTGATTGAATCAGTTACAGATTTTCCTCAGAAGTTCTTCTTCTGCTTCTGGTGGGGTTTCTGCAATCTAAGTTCTCTTGGGCAAAACCTTCAATGTAGTACTTACGTTTGGGAGAATGTCTTTGCTATCTTCATTGCCTTATTGGGATTGATTCTGTTCTCATCACTTATAGGAATCATGCAGAAATATCTACAATCTACAACACTAAGAGTTGAAGACAGAAGATTTGATAAGATGAGGTTCAAAAGGAGAGACATAGAGCGCTGGATGTCCCACCGCATGCTACCAGACAATTTGAAAGAAAGAATTAGGAGGTATGAACAATACAAGTGGCAACAACATAGGGGTGTTGATGAGGAAGAAATAATTGGCAGCCTCCCTAAAGATCTTAGAATGGACGTAAACCGTCATCTCTTGATTTTACTTAGAAGAGTGCCAATGTTTGAGAACTTCAACAGACAATTTTTGGATGCAATGTGTGATAGACTAAAGCTAGTCCTTTACACTGAGAAGAGCTACATTGTTTGTGAACGAGATCCAGTTGATGAAATGCTCTTCATTGTGCGGGGAAACCTCAGAACTGTCACTACAAACGGCGGCAAAACAGGTTTCTTCAACATCTTTGAGCTCCGGCCTGGTGACTTCTGTGGAGAAGAGCTTCTAACATGGGCCTTGGATCCAAATTCCCCACCAAATCTACCAATTTCAACAAGAACTGTTGAAACCATATCTGAAGTTGAAGCTTTTGCTCTCATGGCAGACGACTTGAAGGTTGTTATTTCGCAATTCCAGCGCACTATAATCAGCAAACAACTGCAGCATACTTTCAGATTCTATTCCAGACAATGGAGGACATGGGCAGCATGTTTCATCCAAGCGGCATGGCACAGATATTGGAGGAAGAAGGCAGAGAAGGCATTACTTGAAGCCGAAGAGGTGCAACCTTTTGGAAATGAGGATGGATATACCAACAGCAGCTCATCATCACCAAGCTTTGTTGCCACAGTTTTTGCACAAAAGTTTGCAGCCAAAGCTCTTAGACCCATAAGAAGTGGCAAACGCAGCAACAAAGTTCAGCCACCGACACATAGGTTACTAAGACGGTTGCCTCAGAAACCAGCAGAACCAGATTTCACCTTTCATAACAATTAG 1887 0.4059 MSISVDPLFFYIPVINEELKCLSLNRNLKITACVLRTFFDLIYILHIIFQFGTRFILPSTNVPRTGVLIGNISTIVRRYLGSHFIIDILSIIPLPQMVTLAIIPIPNCSVPYVAKNLLKYTIIVQYVPRVLRLYLLFKEVTRTYGIMTKTAWSGAAFNLFIYMLASHGIGAFWYLLSVESEVRCWQKHLKHTKFSTSSYLSCGQHYKQDVLSLMNTSTCPHVDPDNSTDTSGFNFGIFAPALQSRVIESVTDFPQKFFFCFWWGFCNLSSLGQNLQCSTYVWENVFAIFIALLGLILFSSLIGIMQKYLQSTTLRVEDRRFDKMRFKRRDIERWMSHRMLPDNLKERIRRYEQYKWQQHRGVDEEEIIGSLPKDLRMDVNRHLLILLRRVPMFENFNRQFLDAMCDRLKLVLYTEKSYIVCERDPVDEMLFIVRGNLRTVTTNGGKTGFFNIFELRPGDFCGEELLTWALDPNSPPNLPISTRTVETISEVEAFALMADDLKVVISQFQRTIISKQLQHTFRFYSRQWRTWAACFIQAAWHRYWRKKAEKALLEAEEVQPFGNEDGYTNSSSSSPSFVATVFAQKFAAKALRPIRSGKRSNKVQPPTHRLLRRLPQKPAEPDFTFHNN 628
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30690g00001 628 Gene3D - 10 312 - -
Stsc30690g00001 628 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 1 623 - -
Stsc30690g00001 628 Gene3D Helix hairpin bin 318 383 - -
Stsc30690g00001 628 FunFam Cyclic nucleotide-gated ion channel 1 390 508 - -
Stsc30690g00001 628 Pfam Ion transport protein 14 316 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Stsc30690g00001 628 SMART cnmp_10 392 523 IPR000595 -
Stsc30690g00001 628 SUPERFAMILY Voltage-gated potassium channels 6 310 - -
Stsc30690g00001 628 CDD CAP_ED 392 524 IPR000595 -
Stsc30690g00001 628 Pfam Cyclic nucleotide-binding domain 413 507 IPR000595 -
Stsc30690g00001 628 MobiDBLite consensus disorder prediction 597 628 - -
Stsc30690g00001 628 ProSiteProfiles cAMP/cGMP binding motif profile. 392 475 IPR000595 -
Stsc30690g00001 628 SUPERFAMILY cAMP-binding domain-like 323 509 IPR018490 -
Stsc30690g00001 628 Gene3D Jelly Rolls 390 510 IPR014710 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30690g00001 Stsc-Chr30690 2968 7143 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30690g00001 1 623 Ion Channels AT5G53130 58.983 0.0 706
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30690g00001 K05391 - ahf:112708046 897.116