Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30687g00002 GCTGGTAAGTCTACAACAGGTGGTCAGATACTGTTTCTAAGTGGCCAGGGAAAGACAGTTGAAGTTGGAAGAGCACATTTTGAAACGGAGACAACAAGGTTTACGATTTTGGATGCACCTGGTCACAAAAGTTATGTACCTAACATGATCAGTGGTGCATCTCAGGCTGATATTGGAGTGTTGGTAATTTCAGCTCGAAAGGGAGAATTTGAAACAGGATATGAGAGAGGTGGACAAACTCGTGAACATGTCCAGCTCGCAAAAACATTGGGGGTGGCTAAATTGCTTGTTGTCGTCAATAAAATGGATGAGCCTACTGTTCAATGGTCTAAAGAAAGGTATGATGAAATTGAGTCCAAAATGATACCATTTCTAAGACAATCAGGATACAATGTGAAAAAAGATGTCATTTTTCTACCAATATCTGGGTTGGTTGGTGCAAATATGAAGACCAGAGTGGATAAAAACATTTGTCCATGGTGGAATGGCCCGTGCTTATTTGAAGCTCTTGACGCTGTTGAAGTTCCTGAGCGTGACCCCAAAGGCCCATTTAGGATGCCTATAATTGACAAATTCAAAGACATGGGAACTGTTGTTATGGGAAAAGTGGAGTCTGGTACCGTTCGTGAGGGAGATTCCTTGTTGGTTATGCCAAACAAGGTCAGACGTGCTGGACCCGGTGAAAATTTAAGGATTAGATTATCTGGTGTTGAGGAAGAAGACGTATCAAGTGGGTTTGTCCTATCAAGTGTTGCAAATTCAATACCAGCTGTTACTGAGTTTGTTGCTCAATTGGCAATCCTTGAATTGCTGGACAATGCTATTTTTACTGCGGGGTACAAGGCTGTTTTGCACATCCACTCTGTTGTTGAAGAATGTGAGATTATTGAGCTCTTACATCAAATTGATCCAAAAACAAGGAAACCTATGAAAAAGAAGGTTCTATTTGTGAAGAACGGTGCTAATGTTGTGTGCCGAATTCAGGTTAGTAGCATGATATGCATTGAGAAGTTCTCTGATTTCCCACAACTTGGGAGATTTACTCTTCGCAGTGAAGGAAAAACTGTTGCTGTGGGGAAGGTTACTGCTCTGTAA 1095 0.4146 AGKSTTGGQILFLSGQGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGYERGGQTREHVQLAKTLGVAKLLVVVNKMDEPTVQWSKERYDEIESKMIPFLRQSGYNVKKDVIFLPISGLVGANMKTRVDKNICPWWNGPCLFEALDAVEVPERDPKGPFRMPIIDKFKDMGTVVMGKVESGTVREGDSLLVMPNKVRRAGPGENLRIRLSGVEEEDVSSGFVLSSVANSIPAVTEFVAQLAILELLDNAIFTAGYKAVLHIHSVVEECEIIELLHQIDPKTRKPMKKKVLFVKNGANVVCRIQVSSMICIEKFSDFPQLGRFTLRSEGKTVAVGKVTAL 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30687g00002 364 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1 187 IPR027417 -
Stsc30687g00002 364 Pfam Elongation factor Tu GTP binding domain 16 165 IPR000795 GO:0003924|GO:0005525
Stsc30687g00002 364 SUPERFAMILY Translation proteins 175 253 IPR009000 -
Stsc30687g00002 364 Gene3D Translation factors 179 252 - -
Stsc30687g00002 364 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 1 181 IPR000795 GO:0003924|GO:0005525
Stsc30687g00002 364 PANTHER TRANSLATION FACTOR 16 363 - -
Stsc30687g00002 364 CDD eRF3_C_III 256 364 - -
Stsc30687g00002 364 Gene3D Translation factors 257 364 - -
Stsc30687g00002 364 PRINTS GTP-binding elongation factor signature 35 45 IPR000795 GO:0003924|GO:0005525
Stsc30687g00002 364 PRINTS GTP-binding elongation factor signature 51 62 IPR000795 GO:0003924|GO:0005525
Stsc30687g00002 364 PRINTS GTP-binding elongation factor signature 95 104 IPR000795 GO:0003924|GO:0005525
Stsc30687g00002 364 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 259 363 IPR009001 -
Stsc30687g00002 364 Gene3D - 1 177 IPR027417 -
Stsc30687g00002 364 CDD eRF3_II 183 250 - -
Stsc30687g00002 364 Pfam Elongation factor Tu C-terminal domain 255 363 IPR004160 -
Stsc30687g00002 364 FunFam Putative translation elongation/initiation factor family protein 256 364 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30687g00002 Stsc-Chr30687 27674 32216 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30687g00002 16 364 Eukaryotic Initiation Factors Gene Family AT5G60390 35.695 1.15e-69 223
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30687g00002 K03267 - gmx:100784412 652.514