Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30685g00002 ATGAAACGATCATCATCATCACCATCAGAGAGAGTGATAAAGGTAGAAGAAAAAACTGAAGAGACCATGGAAGATGAAAAGCCAGTCGTTACTACACCACCGATGCGTGAGTGCGAGTTTTGTGGGAAGAAATTCAGTTCCGGAAAAGCCCTTGGCGGCCATAAGAGATTCCACCTTCAACTTCTAAGAAAAGAGAAGGAATTAGCCGAGAAGTTGGCGGCTGCAGCCGCTGACGACGGTGGAGGCGGCAACACGAAGTTGCTGTCTTCATTGGATTCTCCTCCTACCGAGAAGCTAATTTGCTGTCTTTGCAACAAAGAATTTCCATCGGAGAAGTCGTTATTCGGACACATGAGATCTCACCCTGGAAGAGAATGGAGGGGTGTTCACCCTCCCACTACTGAAGGCGACGATGATGACTCGATGGAAGCTGCGCTTTCACCGATTACATCATCTTCGTCTTCTGTTGACGTGGCAAAATCCTTGCCACGATCTTGGTCGAGGACCGGAATTCGAGGCAGGGAAGGCATTTTCGATGCGATTCTTGGAGGTATTGTTGCTATTATGGTTGAAAAAGGGCATCTTGAGAATAAAGGTAGAGAAGAAGAGGAGGGTAATTTGGTCAAAGAAGAGCAAAATTCGAAGAAAAAGAAAAGAGTATTATCTGATACCATGAACGATGAGGTAGTTACAACTAGTAAGAGCAATAGAAAGCTGATAGTGAGACTCAAGACTCGTCCCCATCACGAAGAAGATAATATGGGCGCAGACGGCAGCGGCGATGGCGACAGGTTACCAGATGAAGAAGGGTTTAAATGTAAAATTTGTGAGAAGTCTTTTGTAACATTTCAAGCCCTAAGAGGACATAGGTCAAGCCACAACAAAGAGAAGAAAAGCAAGAATCACAAGGATGATGATAGTGGTGATGGCGAAGAACAATTAAAGTCTTCAAAGAACATTATAGAAGAATCAAGTGAATCTGCTGATTCAAAAGTACTAAGAGGATTTGATTTGAATGAGCCACCAGAGAATAATAATATGGAAGATGGAACATGTTAG 1059 0.4353 MKRSSSSPSERVIKVEEKTEETMEDEKPVVTTPPMRECEFCGKKFSSGKALGGHKRFHLQLLRKEKELAEKLAAAAADDGGGGNTKLLSSLDSPPTEKLICCLCNKEFPSEKSLFGHMRSHPGREWRGVHPPTTEGDDDDSMEAALSPITSSSSSVDVAKSLPRSWSRTGIRGREGIFDAILGGIVAIMVEKGHLENKGREEEEGNLVKEEQNSKKKKRVLSDTMNDEVVTTSKSNRKLIVRLKTRPHHEEDNMGADGSGDGDRLPDEEGFKCKICEKSFVTFQALRGHRSSHNKEKKSKNHKDDDSGDGEEQLKSSKNIIEESSESADSKVLRGFDLNEPPENNNMEDGTC 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30685g00002 352 SMART c2h2final6 271 293 IPR013087 -
Stsc30685g00002 352 SMART c2h2final6 36 58 IPR013087 -
Stsc30685g00002 352 SMART c2h2final6 99 121 IPR013087 -
Stsc30685g00002 352 SUPERFAMILY beta-beta-alpha zinc fingers 100 293 IPR036236 -
Stsc30685g00002 352 ProSitePatterns Zinc finger C2H2 type domain signature. 101 121 IPR013087 -
Stsc30685g00002 352 MobiDBLite consensus disorder prediction 197 265 - -
Stsc30685g00002 352 Pfam C2H2-type zinc finger 37 59 - -
Stsc30685g00002 352 Pfam C2H2-type zinc finger 271 295 - -
Stsc30685g00002 352 Pfam C2H2-type zinc finger 100 122 - -
Stsc30685g00002 352 ProSiteProfiles Zinc finger C2H2 type domain profile. 99 126 IPR013087 -
Stsc30685g00002 352 MobiDBLite consensus disorder prediction 298 330 - -
Stsc30685g00002 352 MobiDBLite consensus disorder prediction 122 152 - -
Stsc30685g00002 352 MobiDBLite consensus disorder prediction 1 31 - -
Stsc30685g00002 352 MobiDBLite consensus disorder prediction 197 224 - -
Stsc30685g00002 352 MobiDBLite consensus disorder prediction 244 265 - -
Stsc30685g00002 352 MobiDBLite consensus disorder prediction 122 137 - -
Stsc30685g00002 352 MobiDBLite consensus disorder prediction 287 352 - -
Stsc30685g00002 352 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 9 75 IPR044653 GO:0003700
Stsc30685g00002 352 Coils Coil 59 79 - -
Stsc30685g00002 352 Gene3D Classic Zinc Finger 10 125 - -
Stsc30685g00002 352 ProSitePatterns Zinc finger C2H2 type domain signature. 273 293 IPR013087 -
Stsc30685g00002 352 ProSitePatterns Zinc finger C2H2 type domain signature. 38 58 IPR013087 -
Stsc30685g00002 352 ProSiteProfiles Zinc finger C2H2 type domain profile. 36 58 IPR013087 -
Stsc30685g00002 352 Gene3D Classic Zinc Finger 263 331 - -
Stsc30685g00002 352 ProSiteProfiles Zinc finger C2H2 type domain profile. 271 298 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30685g00002 Stsc-Chr30685 23379 24437 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30685g00002 38 132 C2H2 Transcription Factor Family AT2G26940 36.667 2.28e-15 73.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Stsc30685g00002 zf-C2H2_6 1.3e-09 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30685g00002 - - adu:107496635 352.058