Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30680g00006 ATGTCTCTAAGGAAGGTGTTCCGCTCACGGAAATTCTCGAAATCGTTCATGGATGTTAACGCCGCGGTGGCTCCTGCCCTCGACGGAGGGGAAAAGAAGGAGGAGGCAGGGGAAGACGGGAATGCGTGGTCGGGGATGTTGCCGGAGCTTCTGAGAGAGATTATAAGGAGGGTGNNNNNNNNNNGGGCTCCTGCCCTCGACGGAGGGGAAAAGAAGGAGGAGGCAGGGGAAGACGGGAATGCGTGGTCGGGGATGTTGCCGGAGCTTCTGAGAGAGATTATAAGGAGGGTGGAGGTGGAGGAGGAGCAGTGGCCGCTGCGGCAGAACGTCGTCGCCTGCGCCTGTGTCTGTAAGCGGTGGAGGGACATGACTCGTGAGATCGTTTCAGAGCCTCAAAATAACGGCAAAATCACTTTTCCTTCGTGTCTTAGGAAGCCAGGTCCACGTGAACTTCCCAACCAGTGTCTGATAAAACGAAACAAGAAGACCTCAACATTTTATCTATATCTTGCCTTAACACCATCATTCACAGACAAAGGGAAGTTTTTGTTAGCAGCTAGAAGATATAGGTGTGGTACCCATACTGAATATATAATATCACTTGATGCTGAGGACTTATCGCAAGGAAGCAATGCTTATGTTGGAAAATTAAGCTCGGATTTTCTTGGTACCAACTTCACAATATACGACAGCCAACCACCCCACACTGGTGCAAAACCATCGAGTGGCAGGTCTAGTCGCCGTTTTGCCAGCAAACAGATAAGCCCTCAAGTTCCTGCAGGTAACTTTGAAGTGGGTCAGGTCTCCTACAAGTTCAACCTCTTGAAATCAAGAGGGCCGAGGAGGATGGTCTGCTCACTCAAGTGTCCTGCCACACCAGAAACTTCAGATATCACATCACCGGACGGTGACAAGACACAAAGTAAAGATCAAGCCACTCCTAACTGTACAATCTTGAAGAATAAGGCACCAAGGTGGCACGAGCATTTGCAGTGCTGGTGCTTGAATTTTCATGGCCGTGTGACAGTAGCATCTGTGAAGAACTTTCAGCTGGTTGCTACAGTGGACCAAAGCCAACCGGGAGGCAAAGGAGACGAGGACACGGTTCTCCTGCAGTTTGGCAAAGTGGGGGATGATACTTTTACCATGGATTATAGGCAGCCCTTATCAGCTTTTCAGGCATTTGCCATTTGCTTGACTAGCTTTGGCACTAAACTGGCATGTGAGTAA 1230 0.4927 MSLRKVFRSRKFSKSFMDVNAAVAPALDGGEKKEEAGEDGNAWSGMLPELLREIIRRVXXXXAPALDGGEKKEEAGEDGNAWSGMLPELLREIIRRVEVEEEQWPLRQNVVACACVCKRWRDMTREIVSEPQNNGKITFPSCLRKPGPRELPNQCLIKRNKKTSTFYLYLALTPSFTDKGKFLLAARRYRCGTHTEYIISLDAEDLSQGSNAYVGKLSSDFLGTNFTIYDSQPPHTGAKPSSGRSSRRFASKQISPQVPAGNFEVGQVSYKFNLLKSRGPRRMVCSLKCPATPETSDITSPDGDKTQSKDQATPNCTILKNKAPRWHEHLQCWCLNFHGRVTVASVKNFQLVATVDQSQPGGKGDEDTVLLQFGKVGDDTFTMDYRQPLSAFQAFAICLTSFGTKLACE 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30680g00006 409 Gene3D Tubby Protein; Chain A 138 409 IPR025659 -
Stsc30680g00006 409 Pfam F-box domain 83 128 IPR001810 GO:0005515
Stsc30680g00006 409 PRINTS Tubby superfamily signature 337 353 IPR000007 -
Stsc30680g00006 409 PRINTS Tubby superfamily signature 197 213 IPR000007 -
Stsc30680g00006 409 PRINTS Tubby superfamily signature 262 289 IPR000007 -
Stsc30680g00006 409 PRINTS Tubby superfamily signature 387 409 IPR000007 -
Stsc30680g00006 409 PRINTS Tubby superfamily signature 213 237 IPR000007 -
Stsc30680g00006 409 PRINTS Tubby superfamily signature 319 336 IPR000007 -
Stsc30680g00006 409 PRINTS Tubby superfamily signature 366 385 IPR000007 -
Stsc30680g00006 409 MobiDBLite consensus disorder prediction 232 253 - -
Stsc30680g00006 409 PANTHER TUBBY-RELATED 79 407 - -
Stsc30680g00006 409 SUPERFAMILY Tubby C-terminal domain-like 133 409 IPR025659 -
Stsc30680g00006 409 Pfam Tub family 143 404 IPR000007 -
Stsc30680g00006 409 ProSitePatterns Tub family signature 1. 337 350 IPR018066 -
Stsc30680g00006 409 ProSitePatterns Tub family signature 2. 394 409 IPR018066 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30680g00006 Stsc-Chr30680 33382 38199 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30680g00006 80 409 TUB Transcription Factor Family AT1G53320 77.219 0.0 539
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Stsc30680g00006 Tub 5.7e-102 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30680g00006 K19600 - gmx:100801919 612.453