Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30680g00004 ATGAACAGGAACACTACTACTACTACTACTTCTTTCATCACTTCCACCACCACCATGAACAAGAAGAATAAGAATCCACTGACAATAAAAGATTCATCATCTTCTTCTTCATCAAGTGATCAAGTAGACTACATGATCATGAGTGGTTTTCCATGGCCACCAAGATCATACACTTGCAGCTTCTGTAGGAAAGAGTTCAAGTCAGCACAAGCTCTTGGTGGCCACATGAATGTTCATAGAAGAGACAGAGCAAGGTTGAGGCATCAATCACCACCACCACCTCCTCCTCCATTATCAACTTCTCATCATCATCATCAACCTCCTATTCTCAACCTTAACATTAACCCTAATAGTATTAATAATAACTTGTCTTACAAAAAACCTTCCACCACCACTACTACTACTACATTGCCCTTGTTTGTTGTGGATGGTGTTTTGCTTAGCCCTTTGAGCACAAAACCCAAGAAAGCTTCATGTGAGGATGTTGGAGGGTATGATGGTAATTTTGCAAGGGAGAAAGAAGAAGAAGATGATGATGATGGGTGCAAGATCTTGAAGAAAGGTGAGATTTTTATGGTGGACTTGGAGATAGGGTTGCCTATTCCTTCTTCTTCTACTACTACTACTACAAGTAATAGAGTAGTAGATTATGATTTGGATCTTGAGCTTCGTTTGGGTACTTGCTCTTAA 690 0.3986 MNRNTTTTTTSFITSTTTMNKKNKNPLTIKDSSSSSSSSDQVDYMIMSGFPWPPRSYTCSFCRKEFKSAQALGGHMNVHRRDRARLRHQSPPPPPPPLSTSHHHHQPPILNLNINPNSINNNLSYKKPSTTTTTTTLPLFVVDGVLLSPLSTKPKKASCEDVGGYDGNFAREKEEEDDDDGCKILKKGEIFMVDLEIGLPIPSSSTTTTTSNRVVDYDLDLELRLGTCS 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30680g00004 229 Pfam C2H2-type zinc finger 57 81 - -
Stsc30680g00004 229 SUPERFAMILY beta-beta-alpha zinc fingers 54 83 IPR036236 -
Stsc30680g00004 229 Gene3D Classic Zinc Finger 33 92 - -
Stsc30680g00004 229 MobiDBLite consensus disorder prediction 85 109 - -
Stsc30680g00004 229 ProSiteProfiles Zinc finger C2H2 type domain profile. 57 84 IPR013087 -
Stsc30680g00004 229 PANTHER OS07G0101800 PROTEIN 32 227 - -
Stsc30680g00004 229 SMART c2h2final6 57 79 IPR013087 -
Stsc30680g00004 229 ProSitePatterns Zinc finger C2H2 type domain signature. 59 79 IPR013087 -
Stsc30680g00004 229 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30680g00004 Stsc-Chr30680 20888 21577 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30680g00004 41 226 C2H2 Transcription Factor Family AT3G23130 37.264 9.12e-29 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Stsc30680g00004 zf-C2H2_6 1.4e-06 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30680g00004 - - aip:107610839 242.276