Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30674g00005 ATGGCAGCCAGCACTACTTTCTCTCTGTGTTTTGCTGCTGCTGCTACTTCTTCTTCATCATCATCACCTTCTTCTTCTTCTTCTTCTAATCATAATTCTAATCCTTTAACACCATTGAATCAGAGGCCGAGGCCTGTGGGAGTAGCAAAACGCTTCGTTTCGTCTTCGGTGGCGGCGCCTTTATCTTCTTTGTGCTTCGGTGCTTCTGCTTCTTCAGTATTCAGCTCCAAAGCTAGGGTTTCCACGGCGTTAACGGCGGTGGTGGATGAAGACACAGCGGTTGCGGAACGGGAACGTGGTTTGGCGGAAAACGATGGCGGTTCGGAGGAGGAAGAGCAATGGAAGCTGCCGAGAGCGACGGAGGTTTACGTCTGCAACCTTCCAAGGAGCTGTGACGCCGAACAGCTACGTCAGATGTTCGAGCCTCACGGACCTATTCTATCCGCTGAGGTTTGCCGGAATGCTGATACGGGTGAGAGTAGAGGGTGTGCTTATGTGACATTGTCATCTGTTGCCTCTGCGAGAAATGCAGTCACTGCCTTGGATGGATCGGATGTTGGTGGACGCGAGATGCGGGTTAGATTCTCGGTTGAGATGAATCCCCAGAGAAGGAACCTTGACACTGCAAACGCTTCACCCAAGAGAGTTTTATACTATGAAGCTCCTCATAAGTTGTACGTTGGTAATCTTGCCAGGGCAGTTAGGCCTGAAGAGTTGAGAAATCTCTTTAGCAAATTCGGCAATGTTGCTAGCGTCAGGTTGTTGCAAGATCGGAAACAAGGGCGAACCCGGGTTTATTCGTTCCTATCTTTCCTATCGGAAAAAGAACGTGATGCTGCATTGACCCTCAATGGAACAGAACTTTGTGGTCGTACATTGGTGGTTAGAGTGGGTGTAGATAAGGGTGAAGCGTAA 915 0.494 MAASTTFSLCFAAAATSSSSSSPSSSSSSNHNSNPLTPLNQRPRPVGVAKRFVSSSVAAPLSSLCFGASASSVFSSKARVSTALTAVVDEDTAVAERERGLAENDGGSEEEEQWKLPRATEVYVCNLPRSCDAEQLRQMFEPHGPILSAEVCRNADTGESRGCAYVTLSSVASARNAVTALDGSDVGGREMRVRFSVEMNPQRRNLDTANASPKRVLYYEAPHKLYVGNLARAVRPEELRNLFSKFGNVASVRLLQDRKQGRTRVYSFLSFLSEKERDAALTLNGTELCGRTLVVRVGVDKGEA 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30674g00005 304 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 120 198 IPR000504 GO:0003723
Stsc30674g00005 304 PANTHER OS02G0815200 PROTEIN 19 297 - -
Stsc30674g00005 304 Gene3D - 205 304 IPR012677 -
Stsc30674g00005 304 Gene3D - 75 204 IPR012677 -
Stsc30674g00005 304 MobiDBLite consensus disorder prediction 17 44 - -
Stsc30674g00005 304 SMART rrm1_1 224 296 IPR000504 GO:0003723
Stsc30674g00005 304 SMART rrm1_1 121 194 IPR000504 GO:0003723
Stsc30674g00005 304 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 122 192 IPR000504 GO:0003723
Stsc30674g00005 304 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 225 293 IPR000504 GO:0003723
Stsc30674g00005 304 SUPERFAMILY RNA-binding domain, RBD 117 206 IPR035979 GO:0003676
Stsc30674g00005 304 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 223 300 IPR000504 GO:0003723
Stsc30674g00005 304 MobiDBLite consensus disorder prediction 17 40 - -
Stsc30674g00005 304 SUPERFAMILY RNA-binding domain, RBD 222 302 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30674g00005 Stsc-Chr30674 5756 7606 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30674g00005 118 303 Eukaryotic Initiation Factors Gene Family AT3G16380 29.412 7.23e-17 79.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30674g00005 - - pcin:129288259 290.812