Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30674g00004 ATGGCAGCCAGCACTACTTTCTCTCTGTGTTTTGCTGCTGCTGCTACTTCTTCTTCATCATCATCACCTTCTTCTTCTTCTTCTTCTAATCATAATTCTAATCCTTTAACACCATTGAATCAGAGGCCGAGGCCTGTGGGAGTAGCAAAACGCTTCGTTTCGTCTTCGGTGGCGGCGCCTTTATCTTCTTTGTGCTTCGGTGCTTCTGCTTCTTCAGTATTCAGCTCCAAAGCTAGGGTTTCCACGGCGTTAACGGCGGTGGTGGATGAAGACACAGCGGTTGCGGAACGGGAACGTGGTTTGGCGGAAAACGATGGCGGTTCGGAGGAGGAAGAGCAATGGAAGCTGCCGAGAGCGACGGAGGTTTACGTCTGCAACCTTCCAAGGAGCTGTGACGCCGAACAGCTACGTCAGATGTTCGAGCCTCACGGACCTATTCTATCCGCTGAGGTTTGCCGGAATGCTGATACGGGTGAGAGTAGAGGGTGTGCTTATGTGACATTGTCATCTGTTGCCTCTGCGAGAAATGCAGTCACTGCCTTGGATGGATCGGATGTTGGTGGACGCGAGATGCGGGTTAGATTCTCGGTTGAGATGAATCCCCAGAGAAGGAACCTTGACACTGCAAACGCTTCACCCAAGAGAGTTTTATACTATGAAGCTCCTCATAAGTTGTACGTTGGTAATCTTGCCAGGGCAGTTAGGCCTGAAGAGTTGAGAAATCTCTTTAGCAAATTCGGCAATGTTGCTAGCGTCAGGTTGTTGCAAGATCGGAAACAAGGGCGAACCCGGGTTTATTCGTTCCTATCTTTCCTATCGGAAAAAGAACGTGATGCTGCATTGACCCTCAATGGAACAGTAAGATATGATTCTATCAACCTCAGTGTTTTGCATTTTTGTGTCTGA 906 0.4879 MAASTTFSLCFAAAATSSSSSSPSSSSSSNHNSNPLTPLNQRPRPVGVAKRFVSSSVAAPLSSLCFGASASSVFSSKARVSTALTAVVDEDTAVAERERGLAENDGGSEEEEQWKLPRATEVYVCNLPRSCDAEQLRQMFEPHGPILSAEVCRNADTGESRGCAYVTLSSVASARNAVTALDGSDVGGREMRVRFSVEMNPQRRNLDTANASPKRVLYYEAPHKLYVGNLARAVRPEELRNLFSKFGNVASVRLLQDRKQGRTRVYSFLSFLSEKERDAALTLNGTVRYDSINLSVLHFCV 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30674g00004 301 PANTHER OS02G0815200 PROTEIN 19 286 - -
Stsc30674g00004 301 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 225 287 IPR000504 GO:0003723
Stsc30674g00004 301 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 122 192 IPR000504 GO:0003723
Stsc30674g00004 301 Gene3D - 75 201 IPR012677 -
Stsc30674g00004 301 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 120 198 IPR000504 GO:0003723
Stsc30674g00004 301 SMART rrm1_1 121 194 IPR000504 GO:0003723
Stsc30674g00004 301 SMART rrm1_1 224 297 IPR000504 GO:0003723
Stsc30674g00004 301 SUPERFAMILY RNA-binding domain, RBD 222 287 IPR035979 GO:0003676
Stsc30674g00004 301 SUPERFAMILY RNA-binding domain, RBD 118 206 IPR035979 GO:0003676
Stsc30674g00004 301 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 223 296 IPR000504 GO:0003723
Stsc30674g00004 301 Gene3D - 202 293 IPR012677 -
Stsc30674g00004 301 MobiDBLite consensus disorder prediction 17 44 - -
Stsc30674g00004 301 MobiDBLite consensus disorder prediction 17 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30674g00004 Stsc-Chr30674 5628 7606 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30674g00004 118 289 Eukaryotic Initiation Factors Gene Family AT3G16380 29.480 7.83e-15 72.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30674g00004 - - pcin:129288259 272.707