Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30673g00006 AGTAACATTAGTGAAAGTGATGGGAGTCAAGCAAACAATCTGTTGGATGCCCAACAAGAAAGTTATGAACAAGAGCAGATTAGGAGCTTGGAATCTGATGTCCGCCAGTTGCCTAGTCAAACAGGAACTGTGGAGAGTAGCACAAATGAGAGTGTTGGTTGGCAAGAAGGTAGTAATCAAGGAGGAAATAGGCAGGAGCAGGTTACCGAAGATGCTGAAGGAAACTGGCAACAGAGAACCTATGATTGGCCACAGGAAACTCCCAGAAATTCAGCTGGGGAAGACACGCATCAACGAGAAGCACAGAGAACTTGGCATGAGGATAGCACAAGGGAAACTGTTGGTAATTGGTCTGAAGGACCTTCTGTAGCCCCAAGGAATCGCCGTGGTGTTCCTATTAGAAGATTCAATAGATTTCATCCACCCGATGATGATAATGTGTACAGTATGGAGCTTAGAGAGCTGCTAAGCAGGAGAAGTGTTTCTAATCTTCTTCGCAGTGGCTTCCGTGAAAGTCTTGACCAGTTAATTCAGTCATATGTGGAAAGGCAAGGTCGTGCACCAATTGACTGGGATTTGCATAGGAACTTGCCGACACCAACTCCTGCCTCACAGGAGCAGGACGCTGATCAGCAAGCGGACGAACACAATGAGGGTCAGCATGAAGGTATAAACAGACCTACACTGGGGATGCCTTCTCCTCCAGTACCTCCACCACAGCCATTGTGGCACCAGGATCTGCATCAAACTGGATGGTCTCGCCATAGCATGCATCGTTCTGAAATTGAATGGGAGATAATGAATGATCTAAGATCAGATATGGCAAGACTTCAGCAAGGCATGAATCACATGCAGAGGATGTTGGAGGCGTGCATGGATATGCAGCTGGAGTTGCAGCGCTCTGTCAGACAGGAAGTTTCTGCAGCTCTTAACCGCTCAGCTGGCTTGGCTGCTGAGACATCTGATGATGGGTCTAAGTGGGGGCATGTGAAAAAGGGAACTTGCTGCGTTTGTTGCGATAACCATATCGATTCACTTCTGTATAGATGCGGGCACATGTGCACTTGCTCAAAGTGTGCCAATGAGTTAGTTCGCGGCGGAGGTAAGTGTCCTTTATGCCGAGCACCGATTGTTGAGGTGGTCCGAGCATATTCCATACTGTAA 1164 0.4777 SNISESDGSQANNLLDAQQESYEQEQIRSLESDVRQLPSQTGTVESSTNESVGWQEGSNQGGNRQEQVTEDAEGNWQQRTYDWPQETPRNSAGEDTHQREAQRTWHEDSTRETVGNWSEGPSVAPRNRRGVPIRRFNRFHPPDDDNVYSMELRELLSRRSVSNLLRSGFRESLDQLIQSYVERQGRAPIDWDLHRNLPTPTPASQEQDADQQADEHNEGQHEGINRPTLGMPSPPVPPPQPLWHQDLHQTGWSRHSMHRSEIEWEIMNDLRSDMARLQQGMNHMQRMLEACMDMQLELQRSVRQEVSAALNRSAGLAAETSDDGSKWGHVKKGTCCVCCDNHIDSLLYRCGHMCTCSKCANELVRGGGKCPLCRAPIVEVVRAYSIL 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30673g00006 387 SUPERFAMILY RING/U-box 334 380 - -
Stsc30673g00006 387 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 4 387 - -
Stsc30673g00006 387 MobiDBLite consensus disorder prediction 1 91 - -
Stsc30673g00006 387 MobiDBLite consensus disorder prediction 1 128 - -
Stsc30673g00006 387 MobiDBLite consensus disorder prediction 191 246 - -
Stsc30673g00006 387 Pfam Zinc finger, C3HC4 type (RING finger) 332 379 - -
Stsc30673g00006 387 Coils Coil 267 287 - -
Stsc30673g00006 387 MobiDBLite consensus disorder prediction 92 113 - -
Stsc30673g00006 387 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 317 385 IPR013083 -
Stsc30673g00006 387 CDD mRING-HC-C3HC5_NEU1 332 384 - -
Stsc30673g00006 387 ProSiteProfiles Zinc finger RING-type profile. 335 374 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30673g00006 Stsc-Chr30673 39564 41705 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30673g00006 335 381 C3H Transcription Factor Family AT3G06140 42.553 4.02e-07 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30673g00006 - - gmx:100805607 664.84