Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30670g00003 ATGGTTTATACTTCCATCCCAGCATATATTGATCCAGTCAATTGGCATCAGCAACAGCAACCAAATCATCAACAAAATAACATAGGAGGCACAAGCTCTCAACTTCTTTATCCCCCACCACCACCTTCTCTTCCGTCATCGACCCAGCAACATGGAGCCAGTGCTGGCTCCATCAGACCTGGGTCTATGGCGGACAAGGCAAGGATGGCTAATATTCCCATGCAAGAGCCAGCACAAAAGTGTCCAAGATGCGAATCTACCAACACAAAGTTTTGCTACTTCAATAACTACAGCCTCTCTCAACCCCGCCACTTCTGCAAGACCTGCCGACGGTACTGGACCCGAGGCGGAGCCCTGAGGAACGTTCCCGTCGGCGGGGGCTGCCGGAGGAACAAGAGAACTAAAGGAACAACCACCAGCAACAGTCGCTCCAAGTCACCACCACCCAGCTCCGATCGCGGGGCTCCCACCGTCTCCAGTGGTGGCTTTGCCTCTGAAATCGTCGGCCTTGGCGCTCCAGTGCCGCCGTCGCTGAGATTCATGGCTCCATTAATGCATCATGATAACCAACTTGGAGATCACTTTTCATCAGGAGTTGGTGGCGGCGGCGGAGAGTTAGGCCTAAACTACGGCGGAGGAATAGGTGACTTAAATTTTCACATAGGAAGTGCTTTGAACGGCGGTGGAGTAAACGGCGGCAGCTCTCTGCTATCAGCTGCAGGTTTGGATCAATTGAGGGTTCCACAAACACAACAATTTCCTTTCATGGCATGTTTCGAAGCTTCATCACATGGTCTATACCAATTTGAAAATAGTACTCATGAGGGTTCTGGATACGGCGGCAGCGGTGGTGGCAGCGACGGTGGTCGGCCGAGTAAGGCGTCGAATTCCGGAGTGTTATCTGTGAAGATGGAAGAAAGTAATAATAATAGTTTGGCAAGGCAGTTTTTGGGAATGAAGAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATTCAGTAGCAAGTAATAGTGAGCATTTTCTTCATGCTTGGAATCATCTTTCTGGTTTTTGTTCTTCTTCCAATACTACTACTACTACCAATAATCCACCATAG 1155 0.4563 MVYTSIPAYIDPVNWHQQQQPNHQQNNIGGTSSQLLYPPPPPSLPSSTQQHGASAGSIRPGSMADKARMANIPMQEPAQKCPRCESTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKRTKGTTTSNSRSKSPPPSSDRGAPTVSSGGFASEIVGLGAPVPPSLRFMAPLMHHDNQLGDHFSSGVGGGGGELGLNYGGGIGDLNFHIGSALNGGGVNGGSSLLSAAGLDQLRVPQTQQFPFMACFEASSHGLYQFENSTHEGSGYGGSGGGSDGGRPSKASNSGVLSVKMEESNNNSLARQFLGMKNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNSVASNSEHFLHAWNHLSGFCSSSNTTTTTNNPP 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30670g00003 384 ProSiteProfiles Zinc finger Dof-type profile. 79 133 IPR003851 GO:0003677|GO:0006355
Stsc30670g00003 384 MobiDBLite consensus disorder prediction 132 158 - -
Stsc30670g00003 384 Pfam Dof domain, zinc finger 78 133 IPR003851 GO:0003677|GO:0006355
Stsc30670g00003 384 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 51 347 IPR045174 GO:0003700|GO:0006355
Stsc30670g00003 384 MobiDBLite consensus disorder prediction 317 354 - -
Stsc30670g00003 384 MobiDBLite consensus disorder prediction 17 61 - -
Stsc30670g00003 384 MobiDBLite consensus disorder prediction 17 34 - -
Stsc30670g00003 384 MobiDBLite consensus disorder prediction 123 159 - -
Stsc30670g00003 384 ProSitePatterns Zinc finger Dof-type signature. 81 117 IPR003851 GO:0003677|GO:0006355
Stsc30670g00003 384 MobiDBLite consensus disorder prediction 277 296 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30670g00003 Stsc-Chr30670 19924 21406 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30670g00003 1 270 C2C2-Dof Transcription Factor Family AT2G37590 43.289 6.05e-50 169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Stsc30670g00003 zf-Dof 1e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30670g00003 - - gmx:100796820 320.472