Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30670g00002 ATGGCAATGAGGGCGGCAGCATCAGCAGCTCCTCGAGGTTTGCGGCGGCTCTTCTGCACAAACACGGCCAATCCTTCTTCGAGCTTTCCTTTCATTCCGCCACCGTCTACGGGGACGCAGCCAGCTCGGTCTGTGGCGGAACCCAACACCAACCTCTTTATCTCTGGGCTTAGCAAACGTACTACTTCAGATAAGTTGAGAGAAGAATTTTCAAAGTTTGGGGAAGTTGTTCAGGCAAGGGTGGTAACTGACCGAGTATCAGGTTACTCTAAGGGGTTTGGTTTTGTGAAGTATGCCACTCTAGAAGATGCTGCGAAGGGCATCGAGGGCATGGATGGCAAGTTTTTGGATGGTTGGGTTATCTTTGCTGAGTACGCAAGGCCGAGACCTCCACCAGGACAACCTGTATATGACATGCCACCGCATTATGGGAGGCAGTGA 441 0.517 MAMRAAASAAPRGLRRLFCTNTANPSSSFPFIPPPSTGTQPARSVAEPNTNLFISGLSKRTTSDKLREEFSKFGEVVQARVVTDRVSGYSKGFGFVKYATLEDAAKGIEGMDGKFLDGWVIFAEYARPRPPPGQPVYDMPPHYGRQ 146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30670g00002 146 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 52 118 IPR000504 GO:0003723
Stsc30670g00002 146 SUPERFAMILY RNA-binding domain, RBD 27 139 IPR035979 GO:0003676
Stsc30670g00002 146 FunFam RNA recognition motif-containing protein 29 139 - -
Stsc30670g00002 146 SMART rrm1_1 51 124 IPR000504 GO:0003723
Stsc30670g00002 146 PANTHER NUCLEOLAR PROTEIN 8 34 131 - -
Stsc30670g00002 146 Gene3D - 24 134 IPR012677 -
Stsc30670g00002 146 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 50 128 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30670g00002 Stsc-Chr30670 13431 15846 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30670g00002 49 130 Eukaryotic Initiation Factors Gene Family AT4G34110 32.927 1.37e-07 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30670g00002 - - psat:127105180 218.009