Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30668g00010 ATGACCAAAAAAATGAGCAACTCAACTAGTGGGGGGTATCTTGGGTCAAGCAACATCACTGGCTATGGATATGGAATAGGAATCTCCATTGGGATCCTCCTTCTGATCACCACCATAACCCTAACCTCCTACTTCTGCACCAGACAGAGACAGATAAACAATGTGCTGGAACCGCAGCCGCGGCACAGAGTTGTTGATGTTGGGATAGATGAAGAAACACTTGTGAGTTATCCAAAGTTGTTGTACTCAGAAGCAAAACTGAAGAAGAATAATGATTCAACAGGTGCAGGTATTGGAGCATGTTGTTCTATATGCCTTGCAGATTACAAAGGGAGTGATATGGTTAGGGTGTTACCAGATTGTGGACACCAATTCCATGTAAAGTGCATAGATCCATGGCTGAGGCTGCACCCAACTTGTCCACTCTGCAGAACCTCTCCCATCCCAACTCCTCTCTCAACTCCCTTGGCTGAAGTCGTTCCATTGTCTTCTTCTACCGCACACCATTCTTCATCATAG 519 0.4547 MTKKMSNSTSGGYLGSSNITGYGYGIGISIGILLLITTITLTSYFCTRQRQINNVLEPQPRHRVVDVGIDEETLVSYPKLLYSEAKLKKNNDSTGAGIGACCSICLADYKGSDMVRVLPDCGHQFHVKCIDPWLRLHPTCPLCRTSPIPTPLSTPLAEVVPLSSSTAHHSSS 172
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Stsc30668g00010 172 ProSiteProfiles Zinc finger RING-type profile. 102 144 IPR001841 -
Stsc30668g00010 172 Pfam Ring finger domain 102 144 IPR001841 -
Stsc30668g00010 172 SMART ring_2 102 143 IPR001841 -
Stsc30668g00010 172 SUPERFAMILY RING/U-box 79 149 - -
Stsc30668g00010 172 CDD RING-H2_PA-TM-RING 101 144 - -
Stsc30668g00010 172 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 57 148 IPR013083 -
Stsc30668g00010 172 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 5 158 IPR045899 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Stsc30668g00010 Stsc-Chr30668 39375 39893 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30668g00010 10 163 C3H Transcription Factor Family AT5G06490 50.000 8.09e-55 170
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30668g00010 - - gmx:100811799 194.897