Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30668g00001 ATGGGAAACAATTGTGTTGGAGCCAGAGACTCCAAAGAAGGACTATTCTCTTTGTCCTATGCTGTGTCCACTCCTTTCTGGTGGTCTAATCCAACAACCGCAATCCAAGAACCTCCTTCAAACCCACCACCTGTTCTACAAAATGCTCCACAGCCAATCAAGATTGATGCCCATCATCAATCACACTACTACAAACACCAGGAGGAGGATAACGATAACCAACAATCTATACAAGTAGTAGTTAGACCAGAAGAGAGACCAAAGGAAAGGACACTGCAAAGTACTAAGAGGCCTGCAAGTGCAGGGCTTCGAGCGGACTCGGTTCTGCCCACACAAACAGGGCACATTAAAGAGTACTTTCATTTGGGAGCTGAGCTTGGCCATGGACAATATGGAACAACTTTCCTTTGTGTAGAGAAGGCTACTGGAATCAAGTATGCCTGCAAGTCCATTGCAAAAGTGAAGTTGCTCACGGATGATGATGTGGATGATGTCAGGAGGGAGATTCAGATAATGCATCACATGGAGGGAAGCCCCAATGTGGTCTCCATCAAAGGGGCTTATGAGGATGCCATTGCCGTTCATGTTGTCATGGAGTTGTGTGCAGGGGGTGAGCTCTTTGATAGGATCATCGAAAGGGGCCATTACACCGAAAAAAAGGCGGCTAAGCTCGCCAGGACTATTGTTAGTGTTGTGGAGGCTTGCCACTCCCTTGGAGTTATGCATCGTGACCTTAAGCCCGAGAATTTCCTTTTTGTTGATGCACATGAAGATTCCAACCTCAAGGCAATAGATTTTGGAATGTCTGCTTTTTTCAAACCAGGAGACAAATTCACCGACGTGGTAGGAAGTCCTTACTACATTGCACCTGAAGTTTTGTGCAAGCATTATGGCCCAGAAGCAGATGTTTGGAGTGCTGGTGTGATGATATACATTCTCTTATGTGGATTCCCTCCATTTTGGGGTGAATCGGAGCAAGAGATTTTTCGGGAGGTTTTGAATGGTGATCTTGATTTCTCTTCTGATCCTTGGCCGAGTATCTCTGAAAGCGCAAAAGACTTGGTGAGGAACATGCTTGTTAGAGATCCAAGAAAACGGATTACAGCTCATGAAGTTCTTTGTCACCCTTGGATTCAGGAAAATGGAGTTGCTCCAGACAAGCCTTTAGATTCTGCAGTTCTGAATCGCCTGAAGCAGTTTTCTGCAATGAACAAGCTCAAGAAAATGGCTCTCAGAGTTATTGCAGAGAATCTCTCTGAAGAAGAAATTTCGGGATTGAAAGAAATATTCAAGATGATAGACACGGACAACAGTGGTCAAATTACTTTTGAAGAACTCAAGGTAGGACTCCGAACGTTTGGTGCTAATCTCAGCGAATCAGAAATGTATGATCTAATGCAAGCTGCAGATGTTGATAACAGTGGCACAATTGAGTATGGAGAATTCATAGCTGCAACATTGCATTTAAACAAAGTTAAAAGAGAAGATCATTTGGTCACAGCTTTCTCATACTTTGATAAAGACGGAAGTGGCTACATCACTCAAGACAAGATTCAACAAGCTTGTGAAGAATTTGGTATGGAGGATGTCAGCTTGGATGAAATCATTCAAGAAGCTGATCAGAATAACGATGGCAGAATAGACTACAATGAATTCGTTGCAATGATGCAGAGAGGAGATTCAGATTTACAGAAGACTAGTAGTGTAAAAGGTAGCTCTAGTTTCAGAATTGGATATAGGGAGGCACTTTCAGTATGCTGA 1761 0.4327 MGNNCVGARDSKEGLFSLSYAVSTPFWWSNPTTAIQEPPSNPPPVLQNAPQPIKIDAHHQSHYYKHQEEDNDNQQSIQVVVRPEERPKERTLQSTKRPASAGLRADSVLPTQTGHIKEYFHLGAELGHGQYGTTFLCVEKATGIKYACKSIAKVKLLTDDDVDDVRREIQIMHHMEGSPNVVSIKGAYEDAIAVHVVMELCAGGELFDRIIERGHYTEKKAAKLARTIVSVVEACHSLGVMHRDLKPENFLFVDAHEDSNLKAIDFGMSAFFKPGDKFTDVVGSPYYIAPEVLCKHYGPEADVWSAGVMIYILLCGFPPFWGESEQEIFREVLNGDLDFSSDPWPSISESAKDLVRNMLVRDPRKRITAHEVLCHPWIQENGVAPDKPLDSAVLNRLKQFSAMNKLKKMALRVIAENLSEEEISGLKEIFKMIDTDNSGQITFEELKVGLRTFGANLSESEMYDLMQAADVDNSGTIEYGEFIAATLHLNKVKREDHLVTAFSYFDKDGSGYITQDKIQQACEEFGMEDVSLDEIIQEADQNNDGRIDYNEFVAMMQRGDSDLQKTSSVKGSSSFRIGYREALSVC 586
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30668g00001 586 PANTHER SERINE/THREONINE-PROTEIN KINASE 112 552 - -
Stsc30668g00001 586 FunFam Calcium-dependent protein kinase 1 122 205 - -
Stsc30668g00001 586 SMART serkin_6 120 378 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30668g00001 586 CDD STKc_CAMK 120 377 - -
Stsc30668g00001 586 CDD EFh 426 485 IPR002048 GO:0005509
Stsc30668g00001 586 ProSiteProfiles Protein kinase domain profile. 120 378 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30668g00001 586 ProSiteProfiles EF-hand calcium-binding domain profile. 421 456 IPR002048 GO:0005509
Stsc30668g00001 586 SMART efh_1 497 525 IPR002048 GO:0005509
Stsc30668g00001 586 SMART efh_1 531 559 IPR002048 GO:0005509
Stsc30668g00001 586 SMART efh_1 425 453 IPR002048 GO:0005509
Stsc30668g00001 586 SMART efh_1 461 489 IPR002048 GO:0005509
Stsc30668g00001 586 ProSitePatterns Protein kinases ATP-binding region signature. 126 153 IPR017441 GO:0005524
Stsc30668g00001 586 SUPERFAMILY EF-hand 407 558 IPR011992 -
Stsc30668g00001 586 SUPERFAMILY Protein kinase-like (PK-like) 112 400 IPR011009 -
Stsc30668g00001 586 Gene3D Phosphorylase Kinase; domain 1 122 205 - -
Stsc30668g00001 586 Gene3D Transferase(Phosphotransferase) domain 1 206 402 - -
Stsc30668g00001 586 ProSiteProfiles EF-hand calcium-binding domain profile. 493 526 IPR002048 GO:0005509
Stsc30668g00001 586 FunFam Calcium-dependent protein kinase 1 386 560 - -
Stsc30668g00001 586 Gene3D - 403 561 - -
Stsc30668g00001 586 ProSiteProfiles EF-hand calcium-binding domain profile. 527 562 IPR002048 GO:0005509
Stsc30668g00001 586 Pfam Protein kinase domain 121 378 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30668g00001 586 MobiDBLite consensus disorder prediction 83 102 - -
Stsc30668g00001 586 ProSitePatterns EF-hand calcium-binding domain. 434 446 IPR018247 -
Stsc30668g00001 586 Pfam EF-hand domain pair 426 486 IPR002048 GO:0005509
Stsc30668g00001 586 Pfam EF-hand domain pair 496 557 IPR002048 GO:0005509
Stsc30668g00001 586 ProSiteProfiles EF-hand calcium-binding domain profile. 457 492 IPR002048 GO:0005509
Stsc30668g00001 586 FunFam Calcium-dependent protein kinase SK5 206 390 - -
Stsc30668g00001 586 ProSitePatterns EF-hand calcium-binding domain. 540 552 IPR018247 -
Stsc30668g00001 586 ProSitePatterns Serine/Threonine protein kinases active-site signature. 240 252 IPR008271 GO:0004672|GO:0006468
Stsc30668g00001 586 ProSitePatterns EF-hand calcium-binding domain. 470 482 IPR018247 -
Stsc30668g00001 586 CDD EFh 501 557 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30668g00001 Stsc-Chr30668 2379 5588 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30668g00001 1 559 EF-hand Containing Proteins AT5G04870 65.152 0.0 784
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Stsc30668g00001 Pkinase 2.1e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30668g00001 K13412 - cave:132191719 838.95