Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30667g00007 ATGGTGGTGGAGAAGAAGGAGATGTTCTTAACGGTTCCGCCGTTCGAGTGCGCGTGGCGGGAGGATCTCAAGTTCCGAGAAGCTGGTCGCGGCTGCGTGGCGTTCGAGGCTTACGCCTGCAATGACGTCACTCTGGTGTTTCGTCAGAATGTTGGAAGCCAAGGTTACCACTACAAAAGGGATAGTAGCCCTCACTACACTGTGATACTGGGGAGCCACCGGAACCGACGGCTCAGGATTGAGGTCAATGGGAAAACGGTGGTTGATGCGGCAGGGATTGGTTTATGCTGTTCCTCATCGTTCCAGAGCTACTGGATCAGCATCTATGACGGTTTGATAAGTATTGGTAATGGAAACTACCCTCTTCAGGGGGTTGTGTTCCAGTGGCGGGACCCAAACCCGAACTGCGGGGTTCAGTACATTGGGCTAAGCAGCTGGGACAAGCATGTCAAGTATAGGAATGTAAATGTGTTGTCTTTGACGCCTCATGTGCCGCAGTTGAAGCACGTGAGTTTTGGTTTGTGTCAGGTTGAGGATGTTGAAGGGGAAGAGATGATGGTGATGGATTATGAGAAATGGGGACTGAAGAATTTTCTTGAGAGTTGGGAGTTGTCTGACATGTTGTTCATCGTTGGCTCAGAGGAACGGCCTGTGCCTGCTCATAAGGCGATATTGGCAGCTTCTGGGAACTTTTCTTTCCGCTCCTCGTCGTCCTTTGTCGTTAAGCTGCCCACCGTCTCTTATGGCATTCTTCATGCGCTGCTTCAGTTCATATACACTGGATGGACCCAGATTCCGCAGCATCAGCTGGGACCATTGAGGGCTTTGAGCCTACAGTTTGAAGTGATGTCACTGGTGAAGCAATGTGAGGAGAACATGGAACGACTTAAGCAAGATGATAAGCTCTCTGATCCTAGCAAGATTGTGGAGTTAACATACCCGTGCATTCAGCTGCATTCCTCGACTTTGGCCTCACTTCCTATCAGCATTGAGAGACTCAGACAATTCAAGTTAACTGGCCAGTACAGCGATGTAAATATCTACATTGAGAGTTACGGCCTTGTTGCACGAGCACATAAAGTTGTACTCAGTTTATGGAGTGTCCCATTTGCCAAGATGTTCACAAATGGAATGAGTGAAAGCATGACCTCAGAGCTTACTCTAAAGGATGTACCAGCAGAAGCTTTCATGGCAATGCTTGACTTTTTATATGATGGAGAATTGAATGACAAAATTATTGATTCTGGCGCATTGTTGCTCCAGCTGCTTTTGTTGGCTGACCAATTTGGAGTGACTTTTCTTCACCAAGAATGCTGCAAAATGCTTTTAGATTGCCTCTCAGAGGGATGA 1350 0.4778 MVVEKKEMFLTVPPFECAWREDLKFREAGRGCVAFEAYACNDVTLVFRQNVGSQGYHYKRDSSPHYTVILGSHRNRRLRIEVNGKTVVDAAGIGLCCSSSFQSYWISIYDGLISIGNGNYPLQGVVFQWRDPNPNCGVQYIGLSSWDKHVKYRNVNVLSLTPHVPQLKHVSFGLCQVEDVEGEEMMVMDYEKWGLKNFLESWELSDMLFIVGSEERPVPAHKAILAASGNFSFRSSSSFVVKLPTVSYGILHALLQFIYTGWTQIPQHQLGPLRALSLQFEVMSLVKQCEENMERLKQDDKLSDPSKIVELTYPCIQLHSSTLASLPISIERLRQFKLTGQYSDVNIYIESYGLVARAHKVVLSLWSVPFAKMFTNGMSESMTSELTLKDVPAEAFMAMLDFLYDGELNDKIIDSGALLLQLLLLADQFGVTFLHQECCKMLLDCLSEG 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30667g00007 449 CDD BTB_POZ_ZBTB_KLHL-like 342 409 - -
Stsc30667g00007 449 CDD BTB_POZ_ZBTB_KLHL-like 204 280 - -
Stsc30667g00007 449 SUPERFAMILY POZ domain 195 293 IPR011333 -
Stsc30667g00007 449 SUPERFAMILY POZ domain 331 443 IPR011333 -
Stsc30667g00007 449 Pfam BTB/POZ domain 335 443 IPR000210 GO:0005515
Stsc30667g00007 449 Pfam BTB/POZ domain 195 294 IPR000210 GO:0005515
Stsc30667g00007 449 Pfam Farnesoic acid 0-methyl transferase 54 150 IPR022041 -
Stsc30667g00007 449 PANTHER OS05G0345500 PROTEIN 1 444 - -
Stsc30667g00007 449 SMART BTB_4 343 446 IPR000210 GO:0005515
Stsc30667g00007 449 SMART BTB_4 205 297 IPR000210 GO:0005515
Stsc30667g00007 449 Gene3D Potassium Channel Kv1.1; Chain A 321 448 IPR011333 -
Stsc30667g00007 449 ProSiteProfiles BTB domain profile. 343 412 IPR000210 GO:0005515
Stsc30667g00007 449 ProSiteProfiles BTB domain profile. 205 267 IPR000210 GO:0005515
Stsc30667g00007 449 Gene3D Potassium Channel Kv1.1; Chain A 193 320 IPR011333 -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Stsc30667g00007 BTB 1.6e-20 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30667g00007 - - lja:Lj5g3v0279120.1 694.115