Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30667g00002 ATGCAAGGACAGCGAGATACAATCGGTTCCTTGCCAGAAACCTTAGAATTCGATTGTGGATCAGCATCGAGCGGTGCAACCACTGCCACAGTGAATCAGCAGATTTGCTGGAATAATATGCGGAATCCTGCGGAAAACCGAATACCCGAATACATACTTCCCCCGAGTGATGCAAACCCTTCTTATGTGAATCCTTTGAATCATGGATGGCAGAATTTGAGTGGATGGAGTTTGGGCGAGCCGAGTTACAGTAATACTCAGAATGAGGTTAACATTAACAATGAACAGAAAAGGGAACTAGGATGGTCACCTTCGATAAGTTTTGGTGCTCCTGCCAGTTCAAGACAAGAAGATCGACGTGTTGAACCGACTAATGCTGTCTCAATGGACAATGCCAATACAAGTAGTACTATGTATGTGCACGGCGCCAATTCTCATATGATGACTCCGCAGAATCTCAACTTGAATGCAGGAATGGGAGACAGTAGCAGTGCTAATATCCATCATGTTGAACATGCTAACTTGCCAAAGTCTATTGGACCGGTAAATGAGCATGTTCCTCCCCCGGTTATCGGTTCTGGTCCTTTGATGCTTCCTTCGGGAAGTAACAGCCTTTTGTTTGAGGACAACGATGGTAGACCAGGTTGTTCTGTTGACACTCGCCGCGTATCTTGTAAAAGAAAGGCTGTTGAACGCAGTGTTGGACAGTGTTCGGATGGTGGAAGTTCTAGCTACAGTCAGCATACAGATGGTAGTGCTTGGAACACCCTGCCGACTCAGGATTATGTTGGCGGTAGCCTTGCGAGATCTTCTTCGGTAGATAGGGTGAGTTCAAGACTCGGCCTAAGTATGGGGGATGGTCCCTCTGAAAGCATTCGTGATTCGAATGTTGCAGCAAACCCAGAAAGCTTCCATAGGAACTTCCGGTTAAGGGTAAATCCTTCGAGTCAACAAAGTTCCATTCCTGTTCCTCCTCCCGCCACATTCTCAACAGGAAATGTGATTAGGACTTCTGGTATTTCTTCATCCGCTCCAATATTGCCAAGATTTCATCCCTCTGATAACTCTCCGGACGTGAGACCAGCACCAACTGTAGATACAATGATTCCTCAAAGTCAGCCCCTTCTAGTTCATGTTCCTGCGTTACCAAGGAATATTCAATCATTTAGGTGGGGTGGTGCTTCTAGTTCGGCAAACAACCATCCGTCAAACTCGGCTATACCTGCTGATAATAGGGACAATAACGTACCTCATGAGGACGCAAGCTCGAGAAGCTTGCCTAGAAACCTTTTAGAACACCCAGTGTTTGCACCTGGAACCAATTTAAGAAATTTGGCTCGAAATCCAACAAGTAGGGCTCCGAGTAGTGGAAACTTAAGTATTCCGGGAAATGTTGCTGCTGCTTCTTCGTCGCGATCTGGGTCACATTCAGCTGTCAATCCATCTTCTGCCTCGCCGTGGGTTGCTCGTCCTAATCCTCAGCATTATCCACGAAGGCTATCTGAATATGTTCGCCGGTCATTGTTTCCTCCTCCTCCCGGCTCTGAGGCTGGCGGCAGTTCAAACAGTAATTATCCTTCCGCACGAGGTCCTGACTCAAGGGCACTGCCATCTGGGGCTCACCCGGGAACACCATCGTGGTTGGATAGGGCAGGTGATCATGAATACGGAATTCCCTATTCAATACGGTCGTTGGCCGTTGCTGGTGAAGGAAGTAGTAGACTTGTGTCTGAGCTCCGAAATGTGTTGGGACTCATGCGTCGTGGTGGGAGCCTGCGATTTGAGGATGTTATGATCCTTGACCAATCGGTGTTTTCTGGAATTGCCGATATTCATGATCGACACAGGGACATGCGACTTGATGTTGATAACATGTCATATGAGGAATTATTGGCTCTGGAAGAGCGCATTGGAAATGTGAGCACCGGATTGAATGAGGAAACCATATTGAAACTTTTGAAACAGAAGAAGCATTCGGATGAGACTGGATCTCAGCGCGAGTCCGAAGCAGAACCCTGCTGTGTTTGTCAGGAGGAGTACAAGGATGGCGAAGACATCGGCACGCTGGATTGTGGCCACGATTTCCATATGGAATGTGTCAAACAGTGGCTAAAGCACAAGAATCTGTGTCCAATTTGTAAGACAACAGGGTTGGCAACAAAGACAACATAG 2172 0.4728 MQGQRDTIGSLPETLEFDCGSASSGATTATVNQQICWNNMRNPAENRIPEYILPPSDANPSYVNPLNHGWQNLSGWSLGEPSYSNTQNEVNINNEQKRELGWSPSISFGAPASSRQEDRRVEPTNAVSMDNANTSSTMYVHGANSHMMTPQNLNLNAGMGDSSSANIHHVEHANLPKSIGPVNEHVPPPVIGSGPLMLPSGSNSLLFEDNDGRPGCSVDTRRVSCKRKAVERSVGQCSDGGSSSYSQHTDGSAWNTLPTQDYVGGSLARSSSVDRVSSRLGLSMGDGPSESIRDSNVAANPESFHRNFRLRVNPSSQQSSIPVPPPATFSTGNVIRTSGISSSAPILPRFHPSDNSPDVRPAPTVDTMIPQSQPLLVHVPALPRNIQSFRWGGASSSANNHPSNSAIPADNRDNNVPHEDASSRSLPRNLLEHPVFAPGTNLRNLARNPTSRAPSSGNLSIPGNVAAASSSRSGSHSAVNPSSASPWVARPNPQHYPRRLSEYVRRSLFPPPPGSEAGGSSNSNYPSARGPDSRALPSGAHPGTPSWLDRAGDHEYGIPYSIRSLAVAGEGSSRLVSELRNVLGLMRRGGSLRFEDVMILDQSVFSGIADIHDRHRDMRLDVDNMSYEELLALEERIGNVSTGLNEETILKLLKQKKHSDETGSQRESEAEPCCVCQEEYKDGEDIGTLDCGHDFHMECVKQWLKHKNLCPICKTTGLATKTT 723
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30667g00002 723 Pfam Ring finger domain 673 714 IPR001841 -
Stsc30667g00002 723 MobiDBLite consensus disorder prediction 443 489 - -
Stsc30667g00002 723 MobiDBLite consensus disorder prediction 232 255 - -
Stsc30667g00002 723 MobiDBLite consensus disorder prediction 392 411 - -
Stsc30667g00002 723 MobiDBLite consensus disorder prediction 96 121 - -
Stsc30667g00002 723 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 221 718 IPR045191 GO:0061630
Stsc30667g00002 723 SUPERFAMILY RING/U-box 672 716 - -
Stsc30667g00002 723 ProSiteProfiles Zinc finger RING-type profile. 673 714 IPR001841 -
Stsc30667g00002 723 SMART ring_2 673 713 IPR001841 -
Stsc30667g00002 723 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 634 717 IPR013083 -
Stsc30667g00002 723 MobiDBLite consensus disorder prediction 236 255 - -
Stsc30667g00002 723 FunFam E3 ubiquitin-protein ligase MBR2 639 718 - -
Stsc30667g00002 723 MobiDBLite consensus disorder prediction 96 112 - -
Stsc30667g00002 723 MobiDBLite consensus disorder prediction 506 550 - -
Stsc30667g00002 723 MobiDBLite consensus disorder prediction 392 493 - -
Stsc30667g00002 723 MobiDBLite consensus disorder prediction 268 295 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30667g00002 Stsc-Chr30667 6817 12391 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30667g00002 1 720 C3H Transcription Factor Family AT2G15530 32.507 6.62e-82 273
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30667g00002 - - gmx:100783014 882.478