Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30666g00002 ATGAGAACTTCATTGTGTTCTGGCATTTTTCTCTTCAGTTTCGTATTCATTTGCCTGAATGATGTAACAGTAACGGTGTTGGGATCTTCCTTCAGCAATGACCTCCACACTCTGCTGAAGCTCAAGGAAGCCATGAAAGGATCAAAAGCCAAACCCGACGCGCTTCAAGACTGGAAATTCTCAACCTCTATCTCCGCCCACTGTTCATTCTCCGGCGTCACCTGCGGCCGCCACAACCTCCGCGTTGTCGCTCTTAACGTCTCCTTTGTTCCCCTTTTCGGCACCATTCCACCGGAGATAGGCCTCTTGGACAAGCTCGAGAATCTTACCCTCTCATCGGACAATCTCACCAACGAGCTCCCCATGGAGCTCGCCAATCTCACCTCCCTCAAGCTCCTCAACATCTCTCACAACTTATTCTCCGGTCGATTCCCCGGCGAGATCACGGTTGCCATGACAGAACTCGAAACGCTGGATGCCTACGACAACAGCTTCAACGGAACCTTACCAGAGGAGTTAGTGAGACTGGAGAAGCTCCGGTGCCTCAACCTCTCCGGCAACTTTTTCTCCGGCGTGATTCCCGAGAGTTACTCTGAGTTCCAAAGCTTGGAGTATCTGAACCTCGCCACAAACTGCTTAACCGGCAACGTTCCAAGAAGCTTAGTGAAACTGAAGAAGCTGAGATATCTCTACCTCGGGTACGTGAATTCCTACTCAGGCGGAGTACCAACGGAATTCGGTTCGTTCGAGTCGTTGCAACTGCTTGATTTGTCCAACTGTAACTTGAGTGGTGAGATTCCACCCACGCTCGGCGCGTTAACTAATTTGCACTCGCTCTTCCTTCAAATGAACAACCTTACCGGAACCATTCCATCAGAACTCTCTAATATGATTAGCCTCAAGTCGTTGGATCTCTCCTACAATGAACTAACGGGTGAGATTCCACTGACCTTCTCCAACCTCAAAAATCTGACGCTAATCAATTTCTTCCAGAACAAACTCCGAGGCAACATCCCATCCTTCGTTGGGGACCTCCCGAACCTCGAGACTTTTCAGGTTTGGGGTAACAACTTCTCAAACGTGCTTCCACCCACCCTTGGCCACAACGGAAGATTATTATTCTTCGACGTCACAAAGAACCACTTCACTGGAGAGCTCCCTCGGGAACTTTGTAAATCTGGGAGGTTGAAAACGTTCTTGGCCACCGGTAACTTCTTCTACGGCACCATCCCTGAAGGAATAGGAGGTTGCGTTACGTTGCAGGAGATAAGAATTAGTGATAACTTCCTCCAAGGACAGGTTCCTCCCGGGATCTTTAAATTGCCAAATGTCACTATCATCGAGATGGGGAATAACCGTTTTAACGGAACACTTCCCTCTGATATTTCCGGCGATTCCCTCGGGATCCTAGCCCTCTCCGGCAACAAGTTCACCGGGAGAATTCCACCGGCGATCCAGAATCTCAAGAAACTGCAAACGCTTGCGCTCGACGCGAACCAGTTCGTTGGAGAGATTCCAGGGGAGGTGTTCGACTTGCCGCTGTTGATCAAGGTTAACATGAGCGGTAACAACCTCACCGGCGAGATTCCAGAGTCGATGATTCACTGTAGCTCCCTGACAGCAGTTGACCTTAGCCGGAACATGCTCACCGGTGAAATTCCGAAAGGAATAAGAAAGCTCACAGTTCTAAGCATCTTAAACCTCTCAAGAAACCACATCACCGGAACTGTCCCCGACGAGATTCGCTTCATGACGAGCCTCAACACGCTCGATCTCTCCGACAACAACTTCGTCGGAAGAGTCCCGACGGGTGGCCAGTTCGTTGCCTTCAACGACAAGTCGTTTGAAGGGAACCCTAACCTCTGCCCCCCGCACCAGCGCTATTGTCCTTCCGCCGCCAACCCTGCCTCGGGAAAAAGCCACAATCCTCTGAGTTCAAAATCAACAAAGGTAGTCATAATCGCAATCGCAATCTCCACGGCGGTGCTGCTGGCTCTGGTGACCGTATACATGATGAGGAAGAGGAAGCGCCAGAAAGAAATGTCGTGGAAGCTGACGGCGTTCCAGTCAACGCTGAAAATGAAGGCGGAGGAGGTGGTGGAATGCTTGAAAGAAGAGAACATAATTGGAAAAGGAGGAGCGGGGATCGTGTACCGCGGGACCACTCCAAAGGGAACGGAGGTAGCAATAAAGAGGCTTGTAGGACAAGGAAGTGGAAGAAACGATTACGGTTTCAAGGCGGAGATAGAGACTTTAGGGAAGATAAGGCACAGGAACATAATGAGGCTTCTAGGGTACGTGTCTAACAAGGACACGAATCTGTTGCTGTATGAGTACATGCCGAATGGAAGCTTGGGAGAGTGGCTGCATGGTGCGAAAGGATGGCACCTGACGTGGGAAATGAGGTATCGGATTGCGGTGGAGGCAGCCAAGGGGCTATGCTATTTGCACCATGATTGCTCACCATTGATCATTCACAGGGATGTCAAGTCCAATAACATCTTGCTTGATCACAACTTTGAGGCACACGTAGCGGACTTTGGGCTCGCCAAGTTCTTGCTGGACCCTGGTGCCTCTCAATCCATGTCCTCAATTGCTGGCTCCTACGGCTACATTGCTCCAGAGTACGCTTACACACTGAAAGTGGACGAGAAGAGTGACGTATACAGCTTTGGAGTAGTGCTGTTGGAGCTGATAGTAGGAAGGAAGCCAGTGGGTGAGTTCGGAGATGGCGTTGACATCGTTGGATGGGTCAACAAGACCATGTCGGAGCTGTCTCAGCCGTCCGATGCAGCTTCGGTTTTGGCAGTGGTGGACCCCAGGCTCAATGGGTATCCATTGGGCAGCGTCATCCACATGTTCAACATAGCTATGATGTGTGTTAGAGAAATTGGGCATGCTAGGCCTACCATGAGAGAAGTTGTTCATATGCTCACTAATCCACCTCAATCTACTACCCATCACAACCTAATTAATCTCTAG 2982 0.5023 MRTSLCSGIFLFSFVFICLNDVTVTVLGSSFSNDLHTLLKLKEAMKGSKAKPDALQDWKFSTSISAHCSFSGVTCGRHNLRVVALNVSFVPLFGTIPPEIGLLDKLENLTLSSDNLTNELPMELANLTSLKLLNISHNLFSGRFPGEITVAMTELETLDAYDNSFNGTLPEELVRLEKLRCLNLSGNFFSGVIPESYSEFQSLEYLNLATNCLTGNVPRSLVKLKKLRYLYLGYVNSYSGGVPTEFGSFESLQLLDLSNCNLSGEIPPTLGALTNLHSLFLQMNNLTGTIPSELSNMISLKSLDLSYNELTGEIPLTFSNLKNLTLINFFQNKLRGNIPSFVGDLPNLETFQVWGNNFSNVLPPTLGHNGRLLFFDVTKNHFTGELPRELCKSGRLKTFLATGNFFYGTIPEGIGGCVTLQEIRISDNFLQGQVPPGIFKLPNVTIIEMGNNRFNGTLPSDISGDSLGILALSGNKFTGRIPPAIQNLKKLQTLALDANQFVGEIPGEVFDLPLLIKVNMSGNNLTGEIPESMIHCSSLTAVDLSRNMLTGEIPKGIRKLTVLSILNLSRNHITGTVPDEIRFMTSLNTLDLSDNNFVGRVPTGGQFVAFNDKSFEGNPNLCPPHQRYCPSAANPASGKSHNPLSSKSTKVVIIAIAISTAVLLALVTVYMMRKRKRQKEMSWKLTAFQSTLKMKAEEVVECLKEENIIGKGGAGIVYRGTTPKGTEVAIKRLVGQGSGRNDYGFKAEIETLGKIRHRNIMRLLGYVSNKDTNLLLYEYMPNGSLGEWLHGAKGWHLTWEMRYRIAVEAAKGLCYLHHDCSPLIIHRDVKSNNILLDHNFEAHVADFGLAKFLLDPGASQSMSSIAGSYGYIAPEYAYTLKVDEKSDVYSFGVVLLELIVGRKPVGEFGDGVDIVGWVNKTMSELSQPSDAASVLAVVDPRLNGYPLGSVIHMFNIAMMCVREIGHARPTMREVVHMLTNPPQSTTHHNLINL 993
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30666g00002 993 Gene3D Phosphorylase Kinase; domain 1 666 779 - -
Stsc30666g00002 993 Gene3D Ribonuclease Inhibitor 346 633 IPR032675 -
Stsc30666g00002 993 Gene3D Ribonuclease Inhibitor 240 341 IPR032675 -
Stsc30666g00002 993 Gene3D Ribonuclease Inhibitor 152 239 IPR032675 -
Stsc30666g00002 993 SMART LRR_typ_2 176 199 IPR003591 -
Stsc30666g00002 993 SMART LRR_typ_2 560 584 IPR003591 -
Stsc30666g00002 993 SMART LRR_typ_2 297 320 IPR003591 -
Stsc30666g00002 993 SMART LRR_typ_2 488 512 IPR003591 -
Stsc30666g00002 993 SMART LRR_typ_2 249 273 IPR003591 -
Stsc30666g00002 993 SMART LRR_typ_2 345 369 IPR003591 -
Stsc30666g00002 993 SMART LRR_typ_2 441 465 IPR003591 -
Stsc30666g00002 993 SUPERFAMILY RNI-like 353 607 - -
Stsc30666g00002 993 SMART serkin_6 703 978 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30666g00002 993 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 237 341 - -
Stsc30666g00002 993 Pfam Leucine rich repeat 490 549 IPR001611 GO:0005515
Stsc30666g00002 993 Pfam Leucine rich repeat 274 334 IPR001611 GO:0005515
Stsc30666g00002 993 Pfam Leucine rich repeat 178 234 IPR001611 GO:0005515
Stsc30666g00002 993 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase 669 779 - -
Stsc30666g00002 993 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase 780 992 - -
Stsc30666g00002 993 Pfam Leucine rich repeat N-terminal domain 33 75 IPR013210 -
Stsc30666g00002 993 Pfam Protein tyrosine and serine/threonine kinase 704 976 IPR001245 GO:0004672|GO:0006468
Stsc30666g00002 993 Gene3D Ribonuclease Inhibitor 33 151 IPR032675 -
Stsc30666g00002 993 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 236 979 - -
Stsc30666g00002 993 SUPERFAMILY Protein kinase-like (PK-like) 689 978 IPR011009 -
Stsc30666g00002 993 FunFam LRR receptor-like serine/threonine-protein kinase EFR 342 634 - -
Stsc30666g00002 993 SUPERFAMILY RNI-like 85 430 - -
Stsc30666g00002 993 ProSiteProfiles Protein kinase domain profile. 703 991 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30666g00002 993 Gene3D Transferase(Phosphotransferase) domain 1 780 990 - -
Stsc30666g00002 993 Pfam Leucine Rich Repeat 251 272 IPR001611 GO:0005515
Stsc30666g00002 993 ProSitePatterns Serine/Threonine protein kinases active-site signature. 824 836 IPR008271 GO:0004672|GO:0006468
Stsc30666g00002 993 FunFam Leucine-rich repeat receptor-like protein kinase 31 195 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30666g00002 Stsc-Chr30666 11700 16050 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30666g00002 34 987 Receptor kinase-like Gene Family AT1G75820 61.990 0.0 1187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Stsc30666g00002 PK_Tyr_Ser-Thr 1e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30666g00002 - - lja:Lj3g3v3375770.1 1438.32