Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30666g00001 ATGGTAATAATTTGTCTTGGATTGCAAATGCTGAATTCAAACAATCTTTACCGGGGCAAGTTCGCACGCCGGCAGCGTTTAAGTGCCAGAGTGTCTGCTATTGGGAATGGAGAAGATGAAATCACATACTTGGCAACTGTCCAGATTTGTGGGCATGTGTTCAAAGGGTTTCTTTATGATCAAGGTGCTGATGGCAAGAATGAAGTTCCATGTGTTTCATTGCTGCAACTTGGAAACTTTGGAAGTGGGAAGAACAACAACAATGGGGATTGCTCCTCCCCAACTCCAATTAGGGTTCCAATCACTGCCTACCCTGCTTCTGCTTGCTGA 330 0.4485 MVIICLGLQMLNSNNLYRGKFARRQRLSARVSAIGNGEDEITYLATVQICGHVFKGFLYDQGADGKNEVPCVSLLQLGNFGSGKNNNNGDCSSPTPIRVPITAYPASAC 109
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30666g00001 109 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 29 88 IPR007818 GO:0003700|GO:0006355
Stsc30666g00001 109 NCBIfam LRP1 C-terminal domain 29 62 IPR006511 -
Stsc30666g00001 109 Pfam Domain of unknown function (DUF702) 29 64 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30666g00001 Stsc-Chr30666 2410 2739 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30666g00001 30 94 C2H2 Transcription Factor Family AT5G12330 52.308 3.76e-14 65.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Stsc30666g00001 DUF702 1.2e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30666g00001 - - adu:107462849 140.584