Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30662g00001 ATGCCGTTGGCGCCGGAATACAGGCCGACGCTGGCGGAGTTCCAAGATCCGATCGCCTACATTTTCAAGATCGAGAAGGAAGCTTCAAAGTATGGAATCTGCAAGATCATACCGCCGTTTCCACCGCCGCCGAGGAAGGTCGCAATCGCCAACTTCACTCGCTCGCTCACTAAGCCCGACGACCCTGACTCAAAGCCCACATTCACCACTCGCCAGCAGCAGATCGGGTTCTGCCCCCGCCGGCCCAGGCCCGTTCAGAGGCCCGTCTGGCAAAGCGGCGAGAACTATACTTTTCAGGAATTCGAGGCTAAGGCCAAAGCATTCGAGAAGAGCTACCTCAAGAAGCACCACCACCACGGTGGTCACCGGAAGGTAGGTGGTGGTTCCGGTGGCCTAGGGCCTCTCGAGGTGGAGACGCTGTTCTGGAAGGCAACCGTTGACAAGCCGTTCTCGGTGGAGTATGCGAACGACATGCCGGGGTCGGCGTTCAGCCGGAAATGTAGGGACGAGTGTGCGGCGGCGCTGGCGGAGTCGGCGTGGAATATGAGGGAGATTTCGAGGGCGAATGGTTCGCTGTTGAGGTTCATGAAGGAGGAGATACCTGGTGTTACTTCTCCCATGGTGTATTTGGCTATGTTGTTCAGCTGGTTCGCTTGGCATGTTGAGGACCATGACCTCCATAGCTTGAATTACCTTCACATGGGTTCTGGTAAGACCTGGTATGGCGTGCCGAGGGATGCTGCTGTGGCTTTCGAAGATGTTGTTAGGGTTCATGGTTATGGCTCAGAGATTAACCCTCTTGTTACTTTTTCTACTCTTGGCGAGAAAAACACAGTGATGTCACCTGAAGTATTGATAAATGCAGGTGTTCCATGCTGCAGGTTAGTTCAAAATGCTGGGGAATTTGTTGTGACTTTTCCAAGAGCTTATCACACAGGGTTTAGTCATGGTTTCAACTGTGGAGAGGCAGCCAACATTGCAACGCCTGAATGGTTGAGAGTTGCAAAAGATGCTGCTATTCGGAGGGCTTCTGTAAATCATTCTCCTATGGTTTCACATTTCCAGTTACTTTATGACCTAGCCTTAGCTTTGTGTTCTAGAATTCCTGAGAGTATCAGTGCTGAACCACGGAGTTCTCGCCTTAAGGATAAGAAGAGGGGTGAAGGGGAAACTGTAATTAAAGAACTATTTGTCCAGGATGTATCCCAGAACAATGATCTGCTTCATGCACTAAGCAAAGAATCTGCGATAATACTTCTACCTCGTAGTTCGTTTGACATTTCTCTTTCCTCAAAATTACGTTATGGATCCAAACAACTAAAAGTGAACTCTCGGTTTTCCCTTAGTGCATGCAATTCCGGGGAAATGAATTCCTCAAAAGGTTTTGTTTCTGATGATCTGGTGTTCAGCGTGAACAGAGGAATCAAGCAAGAAGGTTTTCTTTCTATAAAAGACAAGATTACTTCATTGTGTGAAAGGAGCAGGATTTCTTCATTTGATGTAAATGGCAACATCTGCCCTTCGAGTTCCAAGCCACTTCAAAGTGACACTGAAAGAGAAAGTGGTGATGGGGATGGATCACCAGATAAGAGACTTTTTTCATGCGTCACGTGTGGAATATTATGCTTTCCTTGTGTAGCTATTGTACAGCCTAGGGAGTCTGCTGCTAGATATCTTATGTCAGCTGATTGTAGTTTCTTTAACGATTGGGTTGTTGGTTCTGGAGTCTCTAGCAAAAAGTTTATTGCCCATGAAGAAGTGGCTTTTCCTGATTCAAATATGTATGCAGGGTGGACAGAAAAGAAGACCCAAAATGGATTGTATGGGGATCCTGTTCAATCTACCCAGTATCAGCTACAGACTGCTGAACGAAATTATGAAGAGTCCCTTAATTCTGAAAAAGGAAAAAGCAATACAGCTCTTGCATTGTTAGCTTCAGCATATGGAAATTCTTCCGACTCTGAGGAAGAGCAGGGTGACTCAGATATTGCAGTTGATGGTCATGAATCACATGTGATTAACACTACATCAGGAGGATCACCGTCTACTTTTCAAGATGCTATTCCCTCGACTGGACCTGATAGCAGAAATGAGTTTAGTCATCAATCTTTTGACCGCCCTCTTGATTCTGATACTGCTTCAGGGGTTGCATTAAAAAATACGCGGGCAATGTGTAATTCCACTTCTAATTGTACCCAAGATGCTCATGATGCTGAAACATCATTGCTGGTCAAGACTATGGTTCCTAATGATAATAAAAATGCTTCATTGATGCCAGAATGTGATGAAGACTCATCTAGAATGCATGTCTTCTGTCTGGAGCATGCTGTAGAAGCAGAGCAACAACTTCGCCCAATAGGTGGAGCCCACATAATGCTACTATGTCATCCAGATTTTCCCAAGATAGAGGCTGAAGCTAAGCTTGTAGCAGAAGATCTCGGGATTGATTACCTGTGGAAGAAGACTGAGTACAGGGATTCCAGCAAGGAGGATGAGGAGAGGATCCAGTTAGCCCTGGATAGTGAGGAAGCTATTCCTGGGAATG 2545 0.4637 MPLAPEYRPTLAEFQDPIAYIFKIEKEASKYGICKIIPPFPPPPRKVAIANFTRSLTKPDDPDSKPTFTTRQQQIGFCPRRPRPVQRPVWQSGENYTFQEFEAKAKAFEKSYLKKHHHHGGHRKVGGGSGGLGPLEVETLFWKATVDKPFSVEYANDMPGSAFSRKCRDECAAALAESAWNMREISRANGSLLRFMKEEIPGVTSPMVYLAMLFSWFAWHVEDHDLHSLNYLHMGSGKTWYGVPRDAAVAFEDVVRVHGYGSEINPLVTFSTLGEKNTVMSPEVLINAGVPCCRLVQNAGEFVVTFPRAYHTGFSHGFNCGEAANIATPEWLRVAKDAAIRRASVNHSPMVSHFQLLYDLALALCSRIPESISAEPRSSRLKDKKRGEGETVIKELFVQDVSQNNDLLHALSKESAIILLPRSSFDISLSSKLRYGSKQLKVNSRFSLSACNSGEMNSSKGFVSDDLVFSVNRGIKQEGFLSIKDKITSLCERSRISSFDVNGNICPSSSKPLQSDTERESGDGDGSPDKRLFSCVTCGILCFPCVAIVQPRESAARYLMSADCSFFNDWVVGSGVSSKKFIAHEEVAFPDSNMYAGWTEKKTQNGLYGDPVQSTQYQLQTAERNYEESLNSEKGKSNTALALLASAYGNSSDSEEEQGDSDIAVDGHESHVINTTSGGSPSTFQDAIPSTGPDSRNEFSHQSFDRPLDSDTASGVALKNTRAMCNSTSNCTQDAHDAETSLLVKTMVPNDNKNASLMPECDEDSSRMHVFCLEHAVEAEQQLRPIGGAHIMLLCHPDFPKIEAEAKLVAEDLGIDYLWKKTEYRDSSKEDEERIQLALDSEEAIPGN 848
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30662g00001 848 PANTHER LYSINE-SPECIFIC DEMETHYLASE 1 842 - -
Stsc30662g00001 848 Pfam JmjC domain, hydroxylase 207 325 IPR003347 -
Stsc30662g00001 848 SUPERFAMILY Clavaminate synthase-like 92 339 - -
Stsc30662g00001 848 SMART cupin_9 174 343 IPR003347 -
Stsc30662g00001 848 MobiDBLite consensus disorder prediction 671 698 - -
Stsc30662g00001 848 FunFam Probable lysine-specific demethylase ELF6 1 347 - -
Stsc30662g00001 848 MobiDBLite consensus disorder prediction 671 710 - -
Stsc30662g00001 848 Gene3D Cupin 1 348 - -
Stsc30662g00001 848 Pfam jmjN domain 5 38 IPR003349 -
Stsc30662g00001 848 SMART JmjN_1 3 44 IPR003349 -
Stsc30662g00001 848 ProSiteProfiles JmjN domain profile. 4 45 IPR003349 -
Stsc30662g00001 848 ProSiteProfiles JmjC domain profile. 174 343 IPR003347 -
Stsc30662g00001 848 MobiDBLite consensus disorder prediction 507 527 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30662g00001 Stsc-Chr30662 1 5586 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30662g00001 334 848 C2H2 Transcription Factor Family AT3G48430 42.967 1.53e-114 371
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Stsc30662g00001 JmjC 1.8e-36 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30662g00001 - - aip:107632400 1455.65