Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Stsc30661g00002 | ATGGGCAACAAGCTTGGAACACCATCCATATGCATCCCTGTAATAAGAATCAAAAGAAAGGGACGAACAAGTAGAAGATCAGCTGCTGCTAATTTTCCTTCCATCACTGATTTGAGCCTTGAAAATTTCCTGGATACCATTGATGAAGAAACTACTTCACCTTTTGAAGAAGAACATGTCCCCGACTCCGCGGACGAAGTCCCATCCTTTCTTTGCCAAATATGCTTCGAATCGAAGCCTCTAAACCGGTCCTTCGACTTGCAGGGTTGCCCACATTTCTATTGCAAAAGATGCGTAGCCAAATACATTGTGGCAAAGCTCAAAGACAACGTTTTCAATCTCGTGTGCCCTGAGTCAAAATGCTCTGGTTTCTTGAACCCTAATCACTGCAAACCGATTCTACCGAGCAATGTTTTGGAATGGTGGGGACGCGTTCTAAGCGAATCGGCGATCCCTGAGAATGTGAAATTGTATTGTCCTTTCAATGATTGCTCTGCACTGTTACTCATCAACACCAATGATGATGATGATCATGGAAAATGTGGTGGGATGGTGGAATCAGATTGTCCTCATTGCAAGAGAAGCATTTGTGTTAAGTGTAAGGTGCCATGGCACACTGAATTGAGCTGTGAGAAATTTCAGAAATTGAAGAACAATAGCAATGATCTCATGCTGGATTTGGTGAAGAGAAGGAAGTGGAAACAGTGCCCTAATTGCAAGCGCTACGTTGAGAAGAAAGATGGCTGCGATTATATAACATGCAGAAATAGGATTGAGTTTCACTCTTATTTTCAGTTACCGACTAGTGTTTAA | 813 | 0.4244 | MGNKLGTPSICIPVIRIKRKGRTSRRSAAANFPSITDLSLENFLDTIDEETTSPFEEEHVPDSADEVPSFLCQICFESKPLNRSFDLQGCPHFYCKRCVAKYIVAKLKDNVFNLVCPESKCSGFLNPNHCKPILPSNVLEWWGRVLSESAIPENVKLYCPFNDCSALLLINTNDDDDHGKCGGMVESDCPHCKRSICVKCKVPWHTELSCEKFQKLKNNSNDLMLDLVKRRKWKQCPNCKRYVEKKDGCDYITCRNRIEFHSYFQLPTSV | 270 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Stsc30661g00002 | 270 | ProSiteProfiles | Zinc finger RING-type profile. | 72 | 120 | IPR001841 | - | |
Stsc30661g00002 | 270 | ProSitePatterns | Zinc finger RING-type signature. | 90 | 99 | IPR017907 | - | |
Stsc30661g00002 | 270 | SMART | ibrneu5 | 140 | 210 | IPR002867 | GO:0008270 | |
Stsc30661g00002 | 270 | SUPERFAMILY | RING/U-box | 69 | 152 | - | - | |
Stsc30661g00002 | 270 | Gene3D | - | 208 | 261 | - | - | |
Stsc30661g00002 | 270 | SUPERFAMILY | RING/U-box | 223 | 254 | - | - | |
Stsc30661g00002 | 270 | Pfam | IBR domain, a half RING-finger domain | 156 | 210 | IPR002867 | GO:0008270 | |
Stsc30661g00002 | 270 | ProSiteProfiles | TRIAD supradomain profile. | 68 | 270 | IPR044066 | - | |
Stsc30661g00002 | 270 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 66 | 153 | IPR013083 | - | |
Stsc30661g00002 | 270 | SUPERFAMILY | RING/U-box | 157 | 215 | - | - | |
Stsc30661g00002 | 270 | CDD | BRcat_RBR_unk | 156 | 213 | - | - | |
Stsc30661g00002 | 270 | PANTHER | RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING | 48 | 258 | IPR031127 | GO:0004842|GO:0016567 | |
Stsc30661g00002 | 270 | FunFam | RBR-type E3 ubiquitin transferase | 68 | 153 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Stsc30661g00002 | Stsc-Chr30661 | 11246 | 13228 | Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Stsc30661g00002 | 72 | 256 | C3H Transcription Factor Family | AT2G19610 | 28.866 | 9.26e-21 | 89.0 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Stsc30661g00002 | K11975 | - | rcu:8259039 | 229.18 |