Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30661g00002 ATGGGCAACAAGCTTGGAACACCATCCATATGCATCCCTGTAATAAGAATCAAAAGAAAGGGACGAACAAGTAGAAGATCAGCTGCTGCTAATTTTCCTTCCATCACTGATTTGAGCCTTGAAAATTTCCTGGATACCATTGATGAAGAAACTACTTCACCTTTTGAAGAAGAACATGTCCCCGACTCCGCGGACGAAGTCCCATCCTTTCTTTGCCAAATATGCTTCGAATCGAAGCCTCTAAACCGGTCCTTCGACTTGCAGGGTTGCCCACATTTCTATTGCAAAAGATGCGTAGCCAAATACATTGTGGCAAAGCTCAAAGACAACGTTTTCAATCTCGTGTGCCCTGAGTCAAAATGCTCTGGTTTCTTGAACCCTAATCACTGCAAACCGATTCTACCGAGCAATGTTTTGGAATGGTGGGGACGCGTTCTAAGCGAATCGGCGATCCCTGAGAATGTGAAATTGTATTGTCCTTTCAATGATTGCTCTGCACTGTTACTCATCAACACCAATGATGATGATGATCATGGAAAATGTGGTGGGATGGTGGAATCAGATTGTCCTCATTGCAAGAGAAGCATTTGTGTTAAGTGTAAGGTGCCATGGCACACTGAATTGAGCTGTGAGAAATTTCAGAAATTGAAGAACAATAGCAATGATCTCATGCTGGATTTGGTGAAGAGAAGGAAGTGGAAACAGTGCCCTAATTGCAAGCGCTACGTTGAGAAGAAAGATGGCTGCGATTATATAACATGCAGAAATAGGATTGAGTTTCACTCTTATTTTCAGTTACCGACTAGTGTTTAA 813 0.4244 MGNKLGTPSICIPVIRIKRKGRTSRRSAAANFPSITDLSLENFLDTIDEETTSPFEEEHVPDSADEVPSFLCQICFESKPLNRSFDLQGCPHFYCKRCVAKYIVAKLKDNVFNLVCPESKCSGFLNPNHCKPILPSNVLEWWGRVLSESAIPENVKLYCPFNDCSALLLINTNDDDDHGKCGGMVESDCPHCKRSICVKCKVPWHTELSCEKFQKLKNNSNDLMLDLVKRRKWKQCPNCKRYVEKKDGCDYITCRNRIEFHSYFQLPTSV 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30661g00002 270 ProSiteProfiles Zinc finger RING-type profile. 72 120 IPR001841 -
Stsc30661g00002 270 ProSitePatterns Zinc finger RING-type signature. 90 99 IPR017907 -
Stsc30661g00002 270 SMART ibrneu5 140 210 IPR002867 GO:0008270
Stsc30661g00002 270 SUPERFAMILY RING/U-box 69 152 - -
Stsc30661g00002 270 Gene3D - 208 261 - -
Stsc30661g00002 270 SUPERFAMILY RING/U-box 223 254 - -
Stsc30661g00002 270 Pfam IBR domain, a half RING-finger domain 156 210 IPR002867 GO:0008270
Stsc30661g00002 270 ProSiteProfiles TRIAD supradomain profile. 68 270 IPR044066 -
Stsc30661g00002 270 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 66 153 IPR013083 -
Stsc30661g00002 270 SUPERFAMILY RING/U-box 157 215 - -
Stsc30661g00002 270 CDD BRcat_RBR_unk 156 213 - -
Stsc30661g00002 270 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 48 258 IPR031127 GO:0004842|GO:0016567
Stsc30661g00002 270 FunFam RBR-type E3 ubiquitin transferase 68 153 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30661g00002 Stsc-Chr30661 11246 13228 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30661g00002 72 256 C3H Transcription Factor Family AT2G19610 28.866 9.26e-21 89.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30661g00002 K11975 - rcu:8259039 229.18