Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30657g00007 ATGCCTCCTCCACCATTAAAGGAGTTGATTGAAGAGATGGAGTCATCAATAGAAGATGTTCCTTGGGTTTTCATCTGTCCAATCTCACTGGAGCCAATGAGAGAGCCAGTCACACTCTGCACTGGCCAAACCTACGACAGATCCAACATCCTCAAATGGTTGTCCCTCGGCCACAACACTTGTCCCACCACCATGCAACACCTTTGGGACCATTCCCTCACCCCCAACACCACCCTCCACGCCTTCATCTTCACATGGTTCTCTCAGAAACACTTCTCCATCAAGAAATGCCTCCAAGATGTTCAAGAAAGAGCCTTTAGCCTCTTGGAATCACTCAACAAGGTTAAGGGTCAAGCAAGAGTCAAGTCCCTCAAGGAACTTCGCCAGCTTCTTGATTCTCACCCTTCAATAAGGAACACAGTTGTGGAACACAACGGAGTTTCCTTGGTTTCTTCATTGTTAGGACCTTTCACTTCCCATGCTGTTGGGTCAGAAGCCATTGGGATACTAGTGAAGCTGGATTTGAGTTCGGAGGCTAAGAAGAATCTGATGAACCCAGCAAAAGTGTCGTTGCTGGTTGATATCATGAACGAGGGAACCATTCAGACAAAGATGAACTGTGCAAAGTTGATTGAGACATTGTTGTTGGAAGGACACGTGTCACCAAGCTTGAGCCTTTTGGTTGGTTTGTTAAGGTTAGTTAGAGACAAGAAGCACCCAAGTGGGGTGGTCTTAAACGGCCTCAAACTGATAAACATGTGCAGTTCCAGTTCCCAAGAATCAGTTATAACTTCCATTGTGAGCATTGGAGCGGTGCCCCAATTGGTGGATCTATTGCCAACATTAAACGATGAGTGCTTGGAGATAGCACTGTGTATTCTGGAAGTGTTGTCAAAAACTCAAGAGGGAAGAATGGCGTTGAAAGATTATTGTCCCAATGTTGTGGTTAATGTGGTGACATTGCTGATGAGGGTCTCTGAAAGATGCAAGCAATTTGCGCTTTCGATATTGTGGGGTATTTACAAGCTTGCACCGGAACAGTGTGCGTCTGAGGCTATGGAGGCTGGTTTGGCGGGAAAGCTGCTTCTGGTGATTCAGAGCGGTTGCAACCCTATTTTGAAGGACATGTCTGTTGAGTTCTTGAAGTTATGCAGTTTGAATTACTCTGCTAGTATCTTCATCTCTAAGTGTATGCTTACCACAACAATTCAATAA 1215 0.4535 MPPPPLKELIEEMESSIEDVPWVFICPISLEPMREPVTLCTGQTYDRSNILKWLSLGHNTCPTTMQHLWDHSLTPNTTLHAFIFTWFSQKHFSIKKCLQDVQERAFSLLESLNKVKGQARVKSLKELRQLLDSHPSIRNTVVEHNGVSLVSSLLGPFTSHAVGSEAIGILVKLDLSSEAKKNLMNPAKVSLLVDIMNEGTIQTKMNCAKLIETLLLEGHVSPSLSLLVGLLRLVRDKKHPSGVVLNGLKLINMCSSSSQESVITSIVSIGAVPQLVDLLPTLNDECLEIALCILEVLSKTQEGRMALKDYCPNVVVNVVTLLMRVSERCKQFALSILWGIYKLAPEQCASEAMEAGLAGKLLLVIQSGCNPILKDMSVEFLKLCSLNYSASIFISKCMLTTTIQ 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30657g00007 404 SUPERFAMILY RING/U-box 7 94 - -
Stsc30657g00007 404 ProSiteProfiles U-box domain profile. 19 93 IPR003613 GO:0004842|GO:0016567
Stsc30657g00007 404 SMART Ubox_2 23 86 IPR003613 GO:0004842|GO:0016567
Stsc30657g00007 404 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 6 101 IPR013083 -
Stsc30657g00007 404 Gene3D - 102 223 IPR011989 -
Stsc30657g00007 404 CDD RING-Ubox_PUB 24 73 IPR045210 -
Stsc30657g00007 404 Gene3D - 225 395 IPR011989 -
Stsc30657g00007 404 PANTHER WDSAM1 PROTEIN 12 390 IPR045185 GO:0061630
Stsc30657g00007 404 Pfam U-box domain 20 90 IPR003613 GO:0004842|GO:0016567
Stsc30657g00007 404 SUPERFAMILY ARM repeat 114 385 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30657g00007 Stsc-Chr30657 35829 37054 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30657g00007 6 404 U-box Gene Family AT3G49810 58.809 9.46e-161 458
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30657g00007 - - aip:107608514 649.818