Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30652g00005 ATGACCGGAGACCTCCCTCAGACAATGAGCTCACTTTCGAGCCTGTCAACACTATATCTGCAAAACAATCAGTTCACCGGCACCATCGATGTTCTTGCTAACCTGCCGCTTGACAATTTGAATGTGGAAAACAATAATTTTACGGGCTGGATACCGGAACAGTTAAATGGCATAAACCTGCAAAAGGGTGGTAACTCATGGAGCTCAGGGCCTGCACCCCCTCCTCCTCCTGGGACACCTCCAGCAACAACCAGGCGCCACCACAAGTCCGGTGGACAAGGCAGCTCATCAGATGGTAGCTCTAGCGACGGGGGCAAAAAATCTGGTATTGGAGCCGGTGGCATTGCTGGAATAGTGATCTCAATATTAGTTGTTGGGGCAATAGTAGCATTCTTCCTGGTGAAGAAAAGATCCAAGAAGTCATCGTCGTTAGATATGGAAAAGCTTGACAATCAGCCGTTGGCTCGTCTATCATCAAATGAAGTGCAAGGACTGAATTCTACGCATACTCCGTCCGTAATTGACTTGAAGACATTTGATGACACTCCTGTGGAACCAATAAATGTTAAACCCCCCATTAAACCCCCACCTCTCAAATCATTTGACGAAGAAGACATACCCAAGAAGCCAACTGCTGTCAAGAAGACTGTCGCGGCTCCCGCAAATGTGAAAGCATATTCTATAGCTGACCTGCAGATTGCTACTTCAAGCTTCAGTGTGGATCAACTCCTAGGTGAGGGGTCTTTCGGTCGCGTATACCGTGCACAATTTGATGATGGCAAGGTTCTTGCTGTAAAGAAGATAGATTCATCTATCCTTCCCCATGATTCGTCCAACGATTTTGTAGAAGTAGTCTCAAACATCTCCCATTTGCATCATCAAAATGTGACAGAGCTTGTTGGTTATTGTTCGGAGCATGGACAACACCTCTTGGTCTACGAGTTCCATAAAAATGGATCGCTGCATGACTTCCTTCACCTACCTGATGAATACAGCAAACCGTTGATATGGAATTCTCGTGTCAAGATCGCTTTAGGGACAGCTCGTGCTTTAGAGTACCTACATGAAGTTTGTTCGCCTTCGGTTGTTCATAAGGATATGAAGTCAACCAATATATTGCTTGATGCAGATCTTAACCCTCATCTTTCAGATTGTGGACTGGCAAGCTATATTCCGAATGCAAACCAGGTATTGAACAATGATGCTGGATCGGGATACGAAGCACCCGAAGTTGGCATGTCTGGTCAGTATACGCTTAAGAGTGATGTCTACAGCTTTGGAGTTGTCATGTTGGAACTTCTTAGTGGAAGGAAACCATTTGACAGCTCAAGGCCAAGATATGAGCAGTCTTTGGTACGGTGGGCGACACCGCAACTCCATGATATTGACGCGTTGGCTAAAATGGTTGATCCTGCACTGGAAGGGCTATACCCTGTTAAATCGCTGTCTCGTTTTGCCGATGTTATCGCACTTTGTGTTCAGCCGGAGCCGGAATTCCGACCACCGATGTCGGAAGTGGTTCAAGCATTAGTGAGGTTAGTGCAGAGAGCAAACATGAGCAAAAGGACATTTGGGACTGAGCAAGGAGGAACACCAAGAGCGGGTGATGAGCCTGATACACCAGACATGTAA 1632 0.4638 MTGDLPQTMSSLSSLSTLYLQNNQFTGTIDVLANLPLDNLNVENNNFTGWIPEQLNGINLQKGGNSWSSGPAPPPPPGTPPATTRRHHKSGGQGSSSDGSSSDGGKKSGIGAGGIAGIVISILVVGAIVAFFLVKKRSKKSSSLDMEKLDNQPLARLSSNEVQGLNSTHTPSVIDLKTFDDTPVEPINVKPPIKPPPLKSFDEEDIPKKPTAVKKTVAAPANVKAYSIADLQIATSSFSVDQLLGEGSFGRVYRAQFDDGKVLAVKKIDSSILPHDSSNDFVEVVSNISHLHHQNVTELVGYCSEHGQHLLVYEFHKNGSLHDFLHLPDEYSKPLIWNSRVKIALGTARALEYLHEVCSPSVVHKDMKSTNILLDADLNPHLSDCGLASYIPNANQVLNNDAGSGYEAPEVGMSGQYTLKSDVYSFGVVMLELLSGRKPFDSSRPRYEQSLVRWATPQLHDIDALAKMVDPALEGLYPVKSLSRFADVIALCVQPEPEFRPPMSEVVQALVRLVQRANMSKRTFGTEQGGTPRAGDEPDTPDM 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30652g00005 543 PANTHER LEUCINE RICH REPEAT KINASE 2 1 517 - -
Stsc30652g00005 543 SMART serkin_6 238 511 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30652g00005 543 MobiDBLite consensus disorder prediction 61 106 - -
Stsc30652g00005 543 FunFam Protein STRUBBELIG-RECEPTOR FAMILY 8 202 315 - -
Stsc30652g00005 543 MobiDBLite consensus disorder prediction 86 104 - -
Stsc30652g00005 543 ProSitePatterns Serine/Threonine protein kinases active-site signature. 362 374 IPR008271 GO:0004672|GO:0006468
Stsc30652g00005 543 ProSiteProfiles Leucine-rich repeat profile. 14 36 IPR001611 GO:0005515
Stsc30652g00005 543 Gene3D Ribonuclease Inhibitor 1 179 IPR032675 -
Stsc30652g00005 543 ProSiteProfiles Protein kinase domain profile. 238 513 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30652g00005 543 MobiDBLite consensus disorder prediction 521 543 - -
Stsc30652g00005 543 Gene3D Phosphorylase Kinase; domain 1 203 315 - -
Stsc30652g00005 543 Pfam Protein tyrosine and serine/threonine kinase 240 510 IPR001245 GO:0004672|GO:0006468
Stsc30652g00005 543 SUPERFAMILY L domain-like 2 58 - -
Stsc30652g00005 543 ProSitePatterns Protein kinases ATP-binding region signature. 244 267 IPR017441 GO:0005524
Stsc30652g00005 543 Gene3D Transferase(Phosphotransferase) domain 1 317 529 - -
Stsc30652g00005 543 SUPERFAMILY Protein kinase-like (PK-like) 220 510 IPR011009 -
Stsc30652g00005 543 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 316 524 - -
Stsc30652g00005 543 MobiDBLite consensus disorder prediction 185 205 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30652g00005 Stsc-Chr30652 23906 27052 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30652g00005 1 542 Strubbelig Receptor Gene Family AT1G53730 69.147 0.0 664
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-V Stsc30652g00005 PK_Tyr_Ser-Thr 9.7e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30652g00005 - - gmx:100780323 779.63