Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30652g00004 ATGATGGAGGATCGAAGGCTGGTGCTGGTTCTGTTCAGCACCTGCATTCTCTGTTTCATGGTCATTGCCATTAATGCTGACACAGATCCAAATGATGCTAATGCTCTAAGGAGCATGTACCAGAGTATGAACTCACCATCTCAGCTCAATTGGCCTCAAAATGGCAATGATCCTTGTGGACAGTCCTGGAAAGGCATTACTTGCTCCAACAATCGCGTCACCGAGATTAAGTTACCTGGTCTTCAACTTAGTGGAACTTTGGGTTACCAGCTACAAAGCTTGACATCTGTGACTTACCTAGACTTAAGTAACAACAATCTTGGTGGCAGCTGGTACCAACTCCCGCCGAATTTGGAGCACCTAAATCTTGCTAATAATAATTTCAATGGGGCGGTTCCGTATTCAATCTCTCAAATTCCTTCGCTTAAATACCTGAATCTCGGTCACAACCAGTTCCAACAAGGATTGACCGTCGACTTTTCAAAGCTTACTTCCCTTTCTACACTGGATCTTTCGTCCAATTCCATGACCGGAGACCTCCCTCAGACAATGAGCTCACTTTCGAGCCTGTCAACACTATATCTGCAAAACAATCAGTTCACCGGCACCATCGATGTTCTTGCTAACCTGCCGCTTGACAATTTGAATGTGGAAAACAATAATTTTACGGGCTGGATACCGGAACAGTTAAATGGCATAAACCTGCAAAAGGGTGGTAACTCATGGAGCTCAGGGCCTGCACCCCCTCCTCCTCCTGGGACACCTCCAGCAACAACCAGGCGCCACCACAAGTCCGGTGGACAAGGCAGCTCATCAGATGGTAGCTCTAGCGACGGGGGCAAAAAATCTGGTATTGGAGCCGGTGGCATTGCTGGAATAGTGATCTCAATATTAGTTGTTGGGGCAATAGTAGCATTCTTCCTGGTGAAGAAAAGATCCAAGAAGTCATCGTCGTTAGATATGGAAAAGCTTGACAATCAGCCGTTGGCTCGTCTATCATCAAATGAAGTGCAAGGACTGAATTCTACGCATACTCCGTCCGTAATTGACTTGAAGACATTTGATGACACTCCTGTGGAACCAATAAATGTTAAACCCCCCATTAAACCCCCACCTCTCAAATCATTTGACGAAGAAGACATACCCAAGAAGCCAACTGCTGTCAAGAAGACTGTCGCGGCTCCCGCAAATGTGAAAGCATATTCTATAGCTGACCTGCAGATTGCTACTTCAAGCTTCAGTGTGGATCAACTCCTAGGTGAGGGGTCTTTCGGTCGCGTATACCGTGCACAATTTGATGATGGCAAGGTTCTTGCTGTAAAGAAGATAGATTCATCTATCCTTCCCCATGATTCGTCCAACGATTTTGTAGAAGTAGTCTCAAACATCTCCCATTTGCATCATCAAAATGTGACAGAGCTTGTTGGTTATTGTTCGGAGCATGGACAACACCTCTTGGTCTACGAGTTCCATAAAAATGGATCGCTGCATGACTTCCTTCACCTACCTGATGAATACAGCAAACCGTTGATATGGAATTCTCGTGTCAAGATCGCTTTAGGGACAGCTCGTGCTTTAGAGTACCTACATGAAGTTTGTTCGCCTTCGGTTGTTCATAAGGATATGAAGTCAACCAATATATTGCTTGATGCAGATCTTAACCCTCATCTTTCAGATTGTGGACTGGCAAGCTATATTCCGAATGCAAACCAGGTATTGAACAATGATGCTGGATCGGGATACGAAGCACCCGAAGTTGGCATGTCTGGTCAGTATACGCTTAAGAGTGATGTCTACAGCTTTGGAGTTGTCATGTTGGAACTTCTTAGTGGAAGGAAACCATTTGACAGCTCAAGGCCAAGATATGAGCAGTCTTTGGTACGGTGGGCGACACCGCAACTCCATGATATTGACGCGTTGGCTAAAATGGTTGATCCTGCACTGGAAGGGCTATACCCTGTTAAATCGCTGTCTCGTTTTGCCGATGTTATCGCACTTTGTGTTCAGCCGGAGCCGGAATTCCGACCACCGATGTCGGAAGTGGTTCAAGCATTAGTGAGGTTAGTGCAGAGAGCAAACATGAGCAAAAGGACATTTGGGACTGAGCAAGGAGGAACACCAAGAGCGGGTGATGAGCCTGATACACCAGACATGTAA 2157 0.459 MMEDRRLVLVLFSTCILCFMVIAINADTDPNDANALRSMYQSMNSPSQLNWPQNGNDPCGQSWKGITCSNNRVTEIKLPGLQLSGTLGYQLQSLTSVTYLDLSNNNLGGSWYQLPPNLEHLNLANNNFNGAVPYSISQIPSLKYLNLGHNQFQQGLTVDFSKLTSLSTLDLSSNSMTGDLPQTMSSLSSLSTLYLQNNQFTGTIDVLANLPLDNLNVENNNFTGWIPEQLNGINLQKGGNSWSSGPAPPPPPGTPPATTRRHHKSGGQGSSSDGSSSDGGKKSGIGAGGIAGIVISILVVGAIVAFFLVKKRSKKSSSLDMEKLDNQPLARLSSNEVQGLNSTHTPSVIDLKTFDDTPVEPINVKPPIKPPPLKSFDEEDIPKKPTAVKKTVAAPANVKAYSIADLQIATSSFSVDQLLGEGSFGRVYRAQFDDGKVLAVKKIDSSILPHDSSNDFVEVVSNISHLHHQNVTELVGYCSEHGQHLLVYEFHKNGSLHDFLHLPDEYSKPLIWNSRVKIALGTARALEYLHEVCSPSVVHKDMKSTNILLDADLNPHLSDCGLASYIPNANQVLNNDAGSGYEAPEVGMSGQYTLKSDVYSFGVVMLELLSGRKPFDSSRPRYEQSLVRWATPQLHDIDALAKMVDPALEGLYPVKSLSRFADVIALCVQPEPEFRPPMSEVVQALVRLVQRANMSKRTFGTEQGGTPRAGDEPDTPDM 718
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30652g00004 718 MobiDBLite consensus disorder prediction 696 718 - -
Stsc30652g00004 718 Gene3D Phosphorylase Kinase; domain 1 378 490 - -
Stsc30652g00004 718 SMART serkin_6 413 686 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30652g00004 718 ProSitePatterns Protein kinases ATP-binding region signature. 419 442 IPR017441 GO:0005524
Stsc30652g00004 718 Gene3D Transferase(Phosphotransferase) domain 1 492 704 - -
Stsc30652g00004 718 PRINTS Leucine-rich repeat signature 97 110 - -
Stsc30652g00004 718 PRINTS Leucine-rich repeat signature 163 176 - -
Stsc30652g00004 718 Gene3D Ribonuclease Inhibitor 29 247 IPR032675 -
Stsc30652g00004 718 FunFam Protein STRUBBELIG-RECEPTOR FAMILY 8 377 490 - -
Stsc30652g00004 718 Pfam Protein tyrosine and serine/threonine kinase 415 685 IPR001245 GO:0004672|GO:0006468
Stsc30652g00004 718 SUPERFAMILY Protein kinase-like (PK-like) 395 685 IPR011009 -
Stsc30652g00004 718 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 15 689 IPR046959 -
Stsc30652g00004 718 FunFam protein STRUBBELIG-RECEPTOR FAMILY 3 29 253 - -
Stsc30652g00004 718 Pfam Leucine rich repeat 160 200 IPR001611 GO:0005515
Stsc30652g00004 718 Pfam Leucine rich repeat 108 152 IPR001611 GO:0005515
Stsc30652g00004 718 MobiDBLite consensus disorder prediction 360 380 - -
Stsc30652g00004 718 MobiDBLite consensus disorder prediction 261 279 - -
Stsc30652g00004 718 MobiDBLite consensus disorder prediction 236 281 - -
Stsc30652g00004 718 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 491 699 - -
Stsc30652g00004 718 ProSitePatterns Serine/Threonine protein kinases active-site signature. 537 549 IPR008271 GO:0004672|GO:0006468
Stsc30652g00004 718 SUPERFAMILY L domain-like 28 230 - -
Stsc30652g00004 718 ProSiteProfiles Protein kinase domain profile. 413 688 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30652g00004 718 Pfam Leucine rich repeat N-terminal domain 30 69 IPR013210 -
Stsc30652g00004 718 ProSiteProfiles Leucine-rich repeat profile. 189 211 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30652g00004 Stsc-Chr30652 22165 27054 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30652g00004 2 717 Strubbelig Receptor Gene Family AT1G53730 66.346 0.0 864
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-V Stsc30652g00004 PK_Tyr_Ser-Thr 1.9e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30652g00004 - - gmx:100780323 1011.52