Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30652g00002 ATGACTATGATGAGTAACAACAACAACCAGAACAACGTTGGTGAAAGAGGAGGAGGAGGAGGGCAATTTGGGGACACCACTCTCACCAAGGTGTTTGTGGGTGGTTTGGCATGGGAGACTCCGAAGGAGGCACTCAGACAACACTTCGAGAAGTACGGCGAAATCCTCGAAGCCGTCATCATCTCCGACAAGCTCACCGGCAGATCCAAAGGCTATGGCTTTGTGACATTCAAGGAGGCAGAGGCTGCAAAGAAGGCATGCGAGGAGCAAGCAAGTTTGGTTATCAATGGCCGCAGAGCTAACTGCAATCTTGCTTCCCTCGGAGCTCGTCGTCCTAGGTCTAATAATTCTTCACCACCCCCACAACCAAAAGGCGCAGAAGGATCCAACGGTGGAGGAGGAAGGAACAACGCATCAAGCACTCCATCATCTGGTAACCATGTGCAGTGGTATTATCCTGTGGGTGCACCTCCATCGCCGTACCATCATCATCATCATCCAGCCGTTCCTTTCTATGGGTACTCTACTACTCCTACCTACATCTCAACTGACATGATGAATTACAATTACAGTCAGGTAAGGCATTAA 588 0.4983 MTMMSNNNNQNNVGERGGGGGQFGDTTLTKVFVGGLAWETPKEALRQHFEKYGEILEAVIISDKLTGRSKGYGFVTFKEAEAAKKACEEQASLVINGRRANCNLASLGARRPRSNNSSPPPQPKGAEGSNGGGGRNNASSTPSSGNHVQWYYPVGAPPSPYHHHHHPAVPFYGYSTTPTYISTDMMNYNYSQVRH 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30652g00002 195 MobiDBLite consensus disorder prediction 1 21 - -
Stsc30652g00002 195 MobiDBLite consensus disorder prediction 106 151 - -
Stsc30652g00002 195 PANTHER BOULE-RELATED 10 188 - -
Stsc30652g00002 195 SUPERFAMILY RNA-binding domain, RBD 26 137 IPR035979 GO:0003676
Stsc30652g00002 195 SMART rrm1_1 30 103 IPR000504 GO:0003723
Stsc30652g00002 195 Gene3D - 24 148 IPR012677 -
Stsc30652g00002 195 MobiDBLite consensus disorder prediction 132 148 - -
Stsc30652g00002 195 MobiDBLite consensus disorder prediction 1 16 - -
Stsc30652g00002 195 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 29 107 IPR000504 GO:0003723
Stsc30652g00002 195 MobiDBLite consensus disorder prediction 108 124 - -
Stsc30652g00002 195 FunFam Putative RNA-binding protein ARP1 23 113 - -
Stsc30652g00002 195 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 31 99 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30652g00002 Stsc-Chr30652 9474 11059 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30652g00002 25 106 C2H2 Transcription Factor Family AT2G19380 45.122 1.52e-15 72.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30652g00002 - - lang:109337745 235.343