Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30648g00003 ATGACAGTAGCAACACAAGTACCTGAATTGGAGCATCCTAAGAAGGCTTTCGGTTGGGCTGCTAGGGATCCCTCTGGTCATCTATCTCCTTTCAATTTCTCTAGAAGGGAGACTGGCGAGAAGGATGTGGCATTCAAAGTGTTGTACTATGGGATTTGTCACTCGGATCTCCACATGGCGAAGAATGAATGTGGCTTTTTCATCTATCCATGGCATGAAATTGTTGGTGTAGTGATAGAAGTGGGAAGCAAGGTTCAAAAGTATAAAATTGGGGACAGAGTAGGGGTGGGATGCTTGGTTGAATCCTGCAGAAATTGTGAAAACTGCAACGATAATCTTGAGAATTATTGCTCCTCATTTACTCTAACATATGGTGCAAAATCCAGTGATGGAAGCATCACATATGAAGGCTACTCTGATTCAATGGTTGTTGATGAACACTTTGTGGTTCGAATTCCTGATGAGTTGCCTCTTGATGTTGCTGCTCCTCTGCTATGTGCTGGGATCACATTGTATAGCCCTCTCAGATATTTTGGACTAGACAAACCTGGCTTGCATGTTGGTGTAGTTGATCTTGCTGGGTTAGGACACGTGGCAGTCAAATTTGCCAAAGGTTTTGGAGCTAAAGTCACTGTTATCAATACCTCACCACACAAGAAGGAGGAAGCAATTCAACATTTGGGAGCTGATTCATTTTTGTTAAGTCGCAACCAAGATCAGATGCAGGGTGCAAAGAAAAGCTTGGATGGTACCATAGACATAATTTCTGTTGTTCATTCTCTTGTGCCTCTCATTGGTTTATTGAAGTCTCATGGTAAAATTGTAATGGTTGGATCACCTGAGAAACCTCTAGAACTGCCAATCCTTCCTTTACTCATGGGGAGAAAATTTGTAGCTGGTAGTGGCATTGGAGGGTTAAAAGAGATTCAGGAGATGATTGATTTTGCTGCAAAACACAATGTGAAACTAGATATTGAAGTCATTCCTATTGATTATGTCAACACAACAATGGAGCGCCTCCTTAAATCAGATGTCAAATATTGCTTCGTCATTGACATTGGAAATACTCTTAAACAAACCTCTTAA 1086 0.4125 MTVATQVPELEHPKKAFGWAARDPSGHLSPFNFSRRETGEKDVAFKVLYYGICHSDLHMAKNECGFFIYPWHEIVGVVIEVGSKVQKYKIGDRVGVGCLVESCRNCENCNDNLENYCSSFTLTYGAKSSDGSITYEGYSDSMVVDEHFVVRIPDELPLDVAAPLLCAGITLYSPLRYFGLDKPGLHVGVVDLAGLGHVAVKFAKGFGAKVTVINTSPHKKEEAIQHLGADSFLLSRNQDQMQGAKKSLDGTIDIISVVHSLVPLIGLLKSHGKIVMVGSPEKPLELPILPLLMGRKFVAGSGIGGLKEIQEMIDFAAKHNVKLDIEVIPIDYVNTTMERLLKSDVKYCFVIDIGNTLKQTS 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30648g00003 361 SMART PKS_ER_names_mod 26 345 IPR020843 GO:0016491
Stsc30648g00003 361 CDD CAD1 17 352 IPR047109 GO:0016616
Stsc30648g00003 361 FunFam Putative cinnamyl alcohol dehydrogenase 6 324 353 - -
Stsc30648g00003 361 Pfam Alcohol dehydrogenase GroES-like domain 41 151 IPR013154 -
Stsc30648g00003 361 FunFam Cinnamyl alcohol dehydrogenase 167 323 - -
Stsc30648g00003 361 SUPERFAMILY GroES-like 22 184 IPR011032 -
Stsc30648g00003 361 FunFam Uncharacterized protein 19 166 - -
Stsc30648g00003 361 Gene3D - 167 323 - -
Stsc30648g00003 361 PANTHER ALDEHYDE REDUCTASE 8 356 IPR047109 GO:0016616
Stsc30648g00003 361 Pfam Zinc-binding dehydrogenase 194 317 IPR013149 -
Stsc30648g00003 361 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 156 322 IPR036291 -
Stsc30648g00003 361 Gene3D - 19 353 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30648g00003 Stsc-Chr30648 31026 32541 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30648g00003 14 358 Monolignol Biosynthesis Gene Families AT4G37990 65.230 1.22e-152 432
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30648g00003 K23232 - gmx:100816901 554.288