Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30645g00002 ATGTTGGAATTCATCACCCTTGCCCCCCAATGCCCAGGACTACGCAACTACTTCATCCATAAAAAATTCTGTAGCACTGCTTCTCTTGCTTTACATGTCTGCTTGCATTGTCTTGTGTATTTGCTGTTGCAGTCTGCACCGGTGAACATCACTGTAGGGTCTCATGTCTGGGTTGAAGATCCCACAGAAGCGTGGATTGATGGAGAAGTTTCTAAAATCAATGGTGAAGAAGTGCATGTTCGCACGACAAATGGGAAAACGGCTGTCACAAATATCTCAAAGGTTTTTCCCAAGGATGATGAAGCTCCTCCTGGAGGTGTAGATGACATGACAAAACTCTCATACTTGCATGAGCCAGGAGTTCTACATAACTTGGCAACTAGATACGAACTCAATGAAATATATACCTATACTGGCAATATCTTGATTGCAGTAAACCCATTTCAAAGATTACCACATCTATATGATACACATATGATGGAACAATATAAAGGTGCTACATTTGGAGAGTTGAGTCCCCATGTTTTTGCAGTTGCAGAAGTTGCATACAGGGCGATGATCAATGAAGGAAAAAGTAACTCAATCCTAGTTAGTGGTGAGAGTGGCGCTGGTAAGACAGAGACAACAAAGATGCTTATGCGATATCTTGCTTACCTTGGGGGCCGTTCTGGAGTAGAAGGGCGTACAGTTGAACAACAAGTTCTAGAATCTAATCCAGTTCTTGAAGCATTTGGCAATGCAAAAACAGTTAGGAACAATAATTCAAGTCGTTTTGGTAAATTTGTTGAGATCCAATTTGACAACAAGGGAAGGATATCCGGCGCAGCTATAAGAACATACTTGCTCGAAAGGTCCCGTGTTTGTCAAATCTCAGATCCTGAGAGAAACTACCATTGCTTTTATCTTCTTTGTGCAGCTCCAGCTGAGGAAAAGGAAAAGTATAAGTTGGGAAGTCCTAGTTCATTCCATTACTTAAATCAATCAAAATGTTATGAACTGGACGGAGTCGATGATACCAATGAGTATATTGCAACTCGTAGGGCTATGGATGTTGTTGGGATCAGTGAGGAAGAGCAAGAGGCAATTTTTAGGGTTGTTGCAGCGATACTGCACCTTGGAAATATTGAATTTTCAAAAGGAGAGGATATTGATTCTTCTGTCATCAAGGATGAGAAGTCTAGGTTCCATCTTAGTACAACTGCTGAACTTCTCCAGTGTGATACTAAGAGCTTGGAAGATGCACTGATCAAGCGTGTCATGATAACACCTGAGGAGATCATTACAAGAACCCTTGATCCTGTTGCAGCTGTTGGTAGCAGGGATGCATTAGCTAAAACTATTTATTCCCGCTTGTTTGATTGGCTTGTGGAGAAGATTAATAATTCAATTGGACAAGATCCAAATTCAAAGTCTATCATTGGAGTTCTTGATATCTATGGGTTTGAAAGTTTTAAGTTCAACAGTTTTGAGCAGTTCTGTATTAATTTTACTAATGAAAAGCTGCAACAACATTTTAATCAGCATGTCTTTAAAATGGAACAAGAAGAATACAGCAAAGAAGAGATTGATTGGAGCTACATAGAGTTTGTTGACAACCAAGATGTTTTGGATCTAATTGAGAAGAAACCTGGAGGAATAATTGCACTCCTTGATGAAGCCTGTATGTTCCCTAAGTCCACACATGAAACATTTGCTCAGAAGTTGTACCAGACATTTAACAGAAACAAGCGTTTTATCAAACCAAAACTTTCAAGGACTAGTTTTACAATATCTCATTATGCAGGAGAGGTGACATATCTGGCTGATATGTTTCTTGACAAAAACAAGGATTATGTGGTTGCAGAACATCAGGATCTGCTGACAGCCTCAAGTTGCTCATTTGTGGCAGGTCTATTCCCCCCTTCTCCACAGGACTCTTCAAAATCATCCAAGTTCTCCTCAATTGGAGCTCGTTTTAAGCTACAACTTCAGTCATTGATGGAAACTCTAAGTTCAACCGAACCTCACTATATCAGATGTGTGAAGCCAAACAATGTCCTCAAGCCTGCTATTTTTGAAAATCTCAACATTATTCAACAATTACGCTGTGGTGGTGTCCTCGAGGCGATTAGAATCAGCTGTGCAGGATATCCTACCAGACGGACCTTTTATGAGTTTCTCAATCGATTTGGTGTTCTTGCCCCTGAAGTTCTAGATGGAAACTTTGATGACAAGGTTGCATGTCAAAAGATCCTGGATAAAATGGGTATGAAAGGCTATCAGATAGGCAAGACAAAAGTTTTCCTGAGAGCTGGTCAAATGGCTGAGTTGGATGCAAGAAGAGCAGAAGTTCTTGGAAATGCAGCCAGAATCATTCAGAGAAAAATACGAACTCATATCGCACAGAAGGAATTCTTTGAATTGCGTCAAGCTGCAGTTTGTTTGCAATCTAATTTGCGAGGTATATTGTCTCGGAAGCTCTATGACCAGTTGCGTCGTGAAGCAGCAGCTTTGAAAATAGAGAAGAACTTTAAAGGATATATTGCCAGGAAATCTTACATGACTGCCCGATCATCCGCAATCACATTGCAGACAGGTTTAAGGGCTATGAAGGCTCGCAATGAGTTTAGATTCCGGAAGCAAACTAAGGCTGCTATTCTTGTCCAGGCTCATTTCCGAGGGCATATGGCACGTTCTTACTATAAAGGACTGCAAAAGGCAGCAATTGTTACCCAATGTGGTTGGAGAAGAAGGGTTGCTAGGAGGGAACTTAGAAAGCTTAAAATGGCTGCAAGAGAAACAGGGGCCCTTCAAGATGCAAAGAACAAACTGGAAAAGCGTGTTGAAGAACTCACATGGCGTTTACAAATTGAGAAGCGTTTAAGAACTGATTTGGAGGAGGAAAAAACACAAGAAATTGCCAAGTTAAAAGATGCTATGCATTCAATGCAAATACAAGTAGAAGAAGCAAATGCCAGGGTCCTCAAAGAGCGTGAGGCAGCTCGGAAAGCCATTGAAGAAGCGCCTCCAGTTATTAAGGAGACTCCTGTTATAATTCATGATACTGAAAAGATGAATTCCTTGATAGCTGAAGTCAGTAATTTGAAGGAATCACTGCTATTGGAGAGAAAGGATAAAGAAGAGGCCAGAAAGGCTCAGGCCGAAGCTGAAGCTAGAAATGTCGAGCTGGTTAAGAAAGTTGACGAATACCAGGGCAAGGTGGATCAACTCCAAGAAATGATTCAAAGGTTGGAGGACAAAATCTCCAATGCAGAGTCAGAAAATCAAGTGCTTCGTCAGCAAGCTCTAGCTGCATCTCCAACTGGAAGAGCTCTATCTGCAAGACCGAAGACAACAATTATTCAAAGGACACCGGAAAATGGGAAAGCTATAAATGGTGGTGGAAAAATTGGATCGGATTTGGCTCTTATATCAAATGTGCGTGAACCTGAATCTGAGGGAAAACCACAGAAACATCTAAATGAGAAACAGCAAGAAAACCAAGAGTTGTTGATCAAATGTATATCACATGATTTGGGATTTTCTGGGGGCAAACCTGTTGCTGCTTGTATTATATATAAATGTCTTCTTCACTGGAGATCATTTGAAGTTGAAAGAACAAGTGTCTTTGACCATATCATTCAGTCAATTGCTTCAGTTGTTGAGGCTCAGGATGATACAAACACAATAGCATATTGGCTGTCTAATACATCTACTTTGTTGTCACTACTCCAACGCACTCTCAAAGCAAGCGGAGCATCTAGCTTAACACCCCAAAGGCGGAGAACAGCATCATCTTCTATGTTCGGAAGAATGTCTCAAGGGCTAAGAGCATCTCCCCAAAGTGCCACATCACTTCAAAATAATAGAGGGGTTGGCAGATTGGATGATTTGCGGCAAGTGGAAGCAAAATATCCAGCACTTCTGTTTAAGCAACAGCTCACTGCTTTCCTGGAAAAAGTATATGGAATGATAAGAGACAATCTGAAAAAGGAGATATCTCCGTTGCTTGGATTGTGCATCCAGGCTCCAAGGACCTCACGGCAAAGTTTAGTGAAAGGACGTGCACGTGCTAATGCAGTTGCTCAACAAGCTTTAATTGCTCACTGGCAAAGTATTGTGAAAAGCTTAAACAATGCTCTAAAGATAATGAAAGACAATTATGTGCCCCCTTTCTTGGTCCGTAAGGTGTTCACTCAGATATTCTCTTTCATTAATGTTCAATTATTCAACAGTCTTCTGTTGCGTCGCGAGTGTTGTTCATTCAGCAATGGAGAGTATGTAAAGGCAGGATTGAGTGAATTAGAGAGATGGTGTGTTGAGGCAACTGATGAGTATGTTGGCTCAGCTTGGGACGAGCTGAAACATATCGGCCAGGCTGTCGAATTCCTAGTGTTGCATCAAAAACCCAAAAAGACATTTAATGAAGTAACAAAGGAGCTCTGCCCGGTTCTCAGTATACAACAGTTATACAGAATCAGTACTATGTACTGGGATGACAAATACGGCACGCATAGTGTGTCTTCAGAAGTTATTACGAACATGAGAACCATCATGTCTGAGGACACCAACAATGCTGTCAGCAGTTCTTTCCTATTAGATGATGATTCCAGCATTCCGTTTTCAGTGGATGACATTTCCAAATCGATGCAACAAATAGAAGTAGCAGATGTGGAACCACCTCCGATGATCCGTGATAACTCAGGATTTGGGTTCTTAGTGGCACGCTCAGAGTGA 4716 0.412 MLEFITLAPQCPGLRNYFIHKKFCSTASLALHVCLHCLVYLLLQSAPVNITVGSHVWVEDPTEAWIDGEVSKINGEEVHVRTTNGKTAVTNISKVFPKDDEAPPGGVDDMTKLSYLHEPGVLHNLATRYELNEIYTYTGNILIAVNPFQRLPHLYDTHMMEQYKGATFGELSPHVFAVAEVAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAYLGGRSGVEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDNKGRISGAAIRTYLLERSRVCQISDPERNYHCFYLLCAAPAEEKEKYKLGSPSSFHYLNQSKCYELDGVDDTNEYIATRRAMDVVGISEEEQEAIFRVVAAILHLGNIEFSKGEDIDSSVIKDEKSRFHLSTTAELLQCDTKSLEDALIKRVMITPEEIITRTLDPVAAVGSRDALAKTIYSRLFDWLVEKINNSIGQDPNSKSIIGVLDIYGFESFKFNSFEQFCINFTNEKLQQHFNQHVFKMEQEEYSKEEIDWSYIEFVDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFAQKLYQTFNRNKRFIKPKLSRTSFTISHYAGEVTYLADMFLDKNKDYVVAEHQDLLTASSCSFVAGLFPPSPQDSSKSSKFSSIGARFKLQLQSLMETLSSTEPHYIRCVKPNNVLKPAIFENLNIIQQLRCGGVLEAIRISCAGYPTRRTFYEFLNRFGVLAPEVLDGNFDDKVACQKILDKMGMKGYQIGKTKVFLRAGQMAELDARRAEVLGNAARIIQRKIRTHIAQKEFFELRQAAVCLQSNLRGILSRKLYDQLRREAAALKIEKNFKGYIARKSYMTARSSAITLQTGLRAMKARNEFRFRKQTKAAILVQAHFRGHMARSYYKGLQKAAIVTQCGWRRRVARRELRKLKMAARETGALQDAKNKLEKRVEELTWRLQIEKRLRTDLEEEKTQEIAKLKDAMHSMQIQVEEANARVLKEREAARKAIEEAPPVIKETPVIIHDTEKMNSLIAEVSNLKESLLLERKDKEEARKAQAEAEARNVELVKKVDEYQGKVDQLQEMIQRLEDKISNAESENQVLRQQALAASPTGRALSARPKTTIIQRTPENGKAINGGGKIGSDLALISNVREPESEGKPQKHLNEKQQENQELLIKCISHDLGFSGGKPVAACIIYKCLLHWRSFEVERTSVFDHIIQSIASVVEAQDDTNTIAYWLSNTSTLLSLLQRTLKASGASSLTPQRRRTASSSMFGRMSQGLRASPQSATSLQNNRGVGRLDDLRQVEAKYPALLFKQQLTAFLEKVYGMIRDNLKKEISPLLGLCIQAPRTSRQSLVKGRARANAVAQQALIAHWQSIVKSLNNALKIMKDNYVPPFLVRKVFTQIFSFINVQLFNSLLLRRECCSFSNGEYVKAGLSELERWCVEATDEYVGSAWDELKHIGQAVEFLVLHQKPKKTFNEVTKELCPVLSIQQLYRISTMYWDDKYGTHSVSSEVITNMRTIMSEDTNNAVSSSFLLDDDSSIPFSVDDISKSMQQIEVADVEPPPMIRDNSGFGFLVARSE 1571
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30645g00002 1571 ProSiteProfiles Myosin motor domain profile. 105 775 IPR001609 GO:0003774|GO:0005524|GO:0016459
Stsc30645g00002 1571 Gene3D - 295 353 - -
Stsc30645g00002 1571 Gene3D - 482 666 - -
Stsc30645g00002 1571 FunFam unconventional myosin-Va 780 828 - -
Stsc30645g00002 1571 FunFam unconventional myosin-Va 829 876 - -
Stsc30645g00002 1571 Pfam Myosin N-terminal SH3-like domain 52 91 IPR004009 GO:0003774|GO:0005524|GO:0016459
Stsc30645g00002 1571 Gene3D - 710 776 - -
Stsc30645g00002 1571 Coils Coil 920 1000 - -
Stsc30645g00002 1571 FunFam Class V myosin 482 623 - -
Stsc30645g00002 1571 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 76 828 IPR027417 -
Stsc30645g00002 1571 Gene3D Kinesin motor domain 108 705 IPR036961 -
Stsc30645g00002 1571 FunFam Myosin XI D 710 773 - -
Stsc30645g00002 1571 ProSiteProfiles IQ motif profile. 849 878 IPR000048 GO:0005515
Stsc30645g00002 1571 PANTHER MYOSIN 101 1502 - -
Stsc30645g00002 1571 ProSiteProfiles Myosin N-terminal SH3-like domain profile. 51 100 IPR004009 GO:0003774|GO:0005524|GO:0016459
Stsc30645g00002 1571 Pfam IQ calmodulin-binding motif 875 895 IPR000048 GO:0005515
Stsc30645g00002 1571 Pfam IQ calmodulin-binding motif 802 821 IPR000048 GO:0005515
Stsc30645g00002 1571 Pfam IQ calmodulin-binding motif 850 870 IPR000048 GO:0005515
Stsc30645g00002 1571 Pfam IQ calmodulin-binding motif 899 918 IPR000048 GO:0005515
Stsc30645g00002 1571 Gene3D - 829 875 - -
Stsc30645g00002 1571 Gene3D - 778 828 - -
Stsc30645g00002 1571 Gene3D - 876 925 - -
Stsc30645g00002 1571 ProSiteProfiles IQ motif profile. 897 926 IPR000048 GO:0005515
Stsc30645g00002 1571 SMART MYSc_2a 99 776 IPR001609 GO:0003774|GO:0005524|GO:0016459
Stsc30645g00002 1571 ProSiteProfiles IQ motif profile. 801 830 IPR000048 GO:0005515
Stsc30645g00002 1571 SMART iq_5 800 822 IPR000048 GO:0005515
Stsc30645g00002 1571 SMART iq_5 896 918 IPR000048 GO:0005515
Stsc30645g00002 1571 SMART iq_5 873 895 IPR000048 GO:0005515
Stsc30645g00002 1571 SMART iq_5 848 870 IPR000048 GO:0005515
Stsc30645g00002 1571 SMART iq_5 777 799 IPR000048 GO:0005515
Stsc30645g00002 1571 SMART iq_5 825 847 IPR000048 GO:0005515
Stsc30645g00002 1571 Coils Coil 1022 1094 - -
Stsc30645g00002 1571 FunFam Myosin 2 355 470 - -
Stsc30645g00002 1571 ProSiteProfiles IQ motif profile. 826 855 IPR000048 GO:0005515
Stsc30645g00002 1571 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 828 926 IPR027417 -
Stsc30645g00002 1571 SMART DIL_2 1389 1496 IPR002710 -
Stsc30645g00002 1571 Gene3D - 54 100 IPR008989 GO:0003774|GO:0005524|GO:0051015
Stsc30645g00002 1571 Gene3D Myosin VI head, motor domain, U50 subdomain 355 644 - -
Stsc30645g00002 1571 FunFam unconventional myosin-Va 877 924 - -
Stsc30645g00002 1571 ProSiteProfiles Dilute domain profile. 1204 1514 IPR002710 -
Stsc30645g00002 1571 Pfam Myosin head (motor domain) 107 763 IPR001609 GO:0003774|GO:0005524|GO:0016459
Stsc30645g00002 1571 CDD MYSc_Myo11 119 763 IPR036018 -
Stsc30645g00002 1571 ProSiteProfiles IQ motif profile. 874 900 IPR000048 GO:0005515
Stsc30645g00002 1571 Pfam DIL domain 1390 1493 IPR002710 -
Stsc30645g00002 1571 CDD MyosinXI_CBD 1155 1537 IPR037975 GO:0007015
Stsc30645g00002 1571 FunFam Myosin heavy chain 295 350 - -
Stsc30645g00002 1571 SUPERFAMILY PspA lactotransferrin-binding region 1015 1092 - -
Stsc30645g00002 1571 PRINTS Myosin heavy chain signature 472 500 IPR001609 GO:0003774|GO:0005524|GO:0016459
Stsc30645g00002 1571 PRINTS Myosin heavy chain signature 525 553 IPR001609 GO:0003774|GO:0005524|GO:0016459
Stsc30645g00002 1571 PRINTS Myosin heavy chain signature 135 154 IPR001609 GO:0003774|GO:0005524|GO:0016459
Stsc30645g00002 1571 PRINTS Myosin heavy chain signature 239 266 IPR001609 GO:0003774|GO:0005524|GO:0016459
Stsc30645g00002 1571 PRINTS Myosin heavy chain signature 192 217 IPR001609 GO:0003774|GO:0005524|GO:0016459
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30645g00002 Stsc-Chr30645 15588 29696 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30645g00002 110 1571 Myosins gene family AT5G20490 80.314 0.0 2458
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30645g00002 K10357 - gmx:100777802 2666.72