Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30644g00002 ATGGAAAACTTCCAAGTATGCATCCAAATATTTCTAATTGGGATAATCTCCACCATTCTTGTTCTAGCTATTCTCAGAAAAAATCGTAATAACAGTGACCACCATCATCAAAACCCACCAAGCCCACCATCATTACCCATCATTGGACACCTTCACTTAATCTCTTTAAAACCACATCAGAGCTTCCACCATATCTCAACCCAATATGGATCTATCTTTCAAATCCTCCTGGGGTCAGTCCCTTGTGTAGTAATTTCTTCACCAGAAATCGTCAAAGAGTTTCTCAAAACACACGAATCTTCCTTCTCTAACCACCTCACGCTGAGCGCAATAGATTACATAACTTATGGCGCAAAGGGGATGGTGTTTGCTCCTTATGGAAGCTATTGGAAGTTTCTAAAGAAGCTTTGTATGTCAGAACTTCTCGGCGGAAGAACCCTAGACCGATTTCTTCCTTTAAGACGCGAAGAGACTCTGAGGTTCCTCAAAGCCTTGCAGAAGAAAGGGGAAGCTGGAGAAATTGTTGATATTAATGGTGAACTTATTAGTCTCACTAATAACATCATTTCAAGAATGACAATGAGCGTAAGGTGTTGCGAAGAAGGAGCCAATTCGGATGATTCAGAAAAGATAAGGGAGATGGTGAAAGAGGTTATGGAACTAGCCGGAAAGTTAAATAATATTTCGGATTTTATTTGGTTGTTTAAGAATTGGAACTTGCAAGGGATCAATAAGAGGCTTAAAATGGTTAGGGAGAGGTTTGATTCAATGATGGAGAGAATCATAAGGGAGCATGAATTGGTAAGGAAGGAGAGGAAGGAAAAAGGAGATAATGGTGGCGGGCAAGTGAGGGATTTGCTTGATATTTTGCTAGAAATACATGAAGATAATAGGATAATTGACGAGATTCAATTCACTAAAGAGAATATCAAGGCTTTCATTTTGGAATTATTCATGGCAGGAACTGACACATCAGCTACTACAATCGAATGGGCTTTAGCAGAATTAATCAACAATCCGCATGTGATGGAAAAAGCAAGACAAGAAATCGATTCAGTAACTACAAACAACAGATTAATACAAGAATCAGATATAGCTAATCTTCCTTATTTGCAGGCCATTGTTAAAGAAACACTAAGACTTCATCCTGTAGTTCCACTTTTTAATAGACAATCAACTGAAACCTCTATAACATGTGGCTATAAAATTCCATCAAAGACCACGTTATTTATTAATTTGTGGTCCATGGGTAGAGACCCCAAGATTTGGAAGAACCCACTTGAGTTTAGGCCTGAGAGGTTCATTGATAAAGAAAGACAATTATTGGATTTGAGAGGACAAAATTTTCAATTATTGCCATTTGGGACTGGAAGAAGAATGTGCCCTGGGGCTTCACTAGCACTTCTAACAGTACCTTGTAACCTTGGTGCCATGATTCAGTGCTTTGAGTGGAAGGTTGATGGGAATGTTAGTATGGAAGAGAAACCTAACTACGACGTCACACTTTCTAGGGCTTATCCTTTAGTTTGTATTCCTGTGCCTCGTTTTGGTCAATTGAACAACCTTGGAGAAAATTAG 1578 0.3891 MENFQVCIQIFLIGIISTILVLAILRKNRNNSDHHHQNPPSPPSLPIIGHLHLISLKPHQSFHHISTQYGSIFQILLGSVPCVVISSPEIVKEFLKTHESSFSNHLTLSAIDYITYGAKGMVFAPYGSYWKFLKKLCMSELLGGRTLDRFLPLRREETLRFLKALQKKGEAGEIVDINGELISLTNNIISRMTMSVRCCEEGANSDDSEKIREMVKEVMELAGKLNNISDFIWLFKNWNLQGINKRLKMVRERFDSMMERIIREHELVRKERKEKGDNGGGQVRDLLDILLEIHEDNRIIDEIQFTKENIKAFILELFMAGTDTSATTIEWALAELINNPHVMEKARQEIDSVTTNNRLIQESDIANLPYLQAIVKETLRLHPVVPLFNRQSTETSITCGYKIPSKTTLFINLWSMGRDPKIWKNPLEFRPERFIDKERQLLDLRGQNFQLLPFGTGRRMCPGASLALLTVPCNLGAMIQCFEWKVDGNVSMEEKPNYDVTLSRAYPLVCIPVPRFGQLNNLGEN 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30644g00002 525 FunFam Cytochrome P450 family protein 30 510 - -
Stsc30644g00002 525 Coils Coil 343 363 - -
Stsc30644g00002 525 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 454 463 IPR017972 GO:0005506|GO:0016705
Stsc30644g00002 525 Gene3D Cytochrome P450 22 508 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc30644g00002 525 PANTHER FLAVONOID 3'-MONOOXYGENASE-RELATED 12 507 - -
Stsc30644g00002 525 PRINTS P450 superfamily signature 452 461 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc30644g00002 525 PRINTS P450 superfamily signature 320 337 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc30644g00002 525 PRINTS P450 superfamily signature 373 384 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc30644g00002 525 PRINTS P450 superfamily signature 461 472 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc30644g00002 525 Pfam Cytochrome P450 39 497 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc30644g00002 525 SUPERFAMILY Cytochrome P450 39 515 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc30644g00002 525 CDD CYP93 70 512 - -
Stsc30644g00002 525 PRINTS E-class P450 group I signature 412 436 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc30644g00002 525 PRINTS E-class P450 group I signature 451 461 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc30644g00002 525 PRINTS E-class P450 group I signature 66 85 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc30644g00002 525 PRINTS E-class P450 group I signature 309 326 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc30644g00002 525 PRINTS E-class P450 group I signature 372 390 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc30644g00002 525 PRINTS E-class P450 group I signature 329 355 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc30644g00002 525 PRINTS E-class P450 group I signature 90 111 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc30644g00002 525 PRINTS E-class P450 group I signature 461 484 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30644g00002 Stsc-Chr30644 24843 26719 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30644g00002 1 515 Cytochrome P450 AT5G06900 44.272 1.01e-153 447
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30644g00002 K24188 - gmx:100805931 653.284