Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30642g00001 ATGTTCTCGAAGCTTCATCAACAACCGCAACAGCAACAACAACACGCTTTCCAACTCTCCCGAGAATGCCAAACCTCAGAAGACGATGACAGCGGTGGGCCCACTCTCGGCCCATCCCAAAAGCCCAACTCAACTGACGGCGCCACTATCGAAGTCATTAGGCGTCCCAGGGGCCGTCCACCTGGCTCCAAAAACAAGCCCAAGCCTCCTCTCGTAATAACACGGGAGCCCGAGCCCGCCATGAGCCCATACATTCTCGAAATCCCCAGCGGAAACGATGTTGTTGAATCCATCGCTACGTTCACGCGACGCAAGAACACAGGCCTCTGCATCCTCTCTGGTTCTGGAACCGTTTCCAACGTCACCCTCCGTCAACCGTCCAACGCCGCCTCCCACGGTGCCATCGTTACGTTCCACGGCCGCTTCGAACTACTCTCGATCTCCGCTTCTTTCCTCCCTCACGCGCCGCCGCATCCGGTTCCGAGTTCGTTCTCCATCTCGCTCGCCGGACCTCAGGGCCAGATCGTCGGAGGACTCGTAGCTGGCAAGCTGATCGCCGTCGGAACGGTGTACGTGGTTGCGGCGTCGTTCAGCAAAGCGGCGTACCACAGGCTGCAGTCATCGGAGGAAGAGGTCGCCGGTGGAGCTGGAGGCGGAGAGGTGCAGTCACCGCCGGTTTCTGCTGCGACGGAGAGCGGAGGAGGGGGACACGTGGCGGTTGGTGATCAGTCTTGTGGTGTTGGAGTCATGTACAGCGGTCACCTCCCTTCCGATGTGATTTGGGCTCCAACGGCAAGACCACCGTTTTGA 810 0.5938 MFSKLHQQPQQQQQHAFQLSRECQTSEDDDSGGPTLGPSQKPNSTDGATIEVIRRPRGRPPGSKNKPKPPLVITREPEPAMSPYILEIPSGNDVVESIATFTRRKNTGLCILSGSGTVSNVTLRQPSNAASHGAIVTFHGRFELLSISASFLPHAPPHPVPSSFSISLAGPQGQIVGGLVAGKLIAVGTVYVVAASFSKAAYHRLQSSEEEVAGGAGGGEVQSPPVSAATESGGGGHVAVGDQSCGVGVMYSGHLPSDVIWAPTARPPF 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30642g00001 269 PIRSF ESCAROLA 1 262 IPR014476 GO:0003680
Stsc30642g00001 269 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 14 231 IPR014476 GO:0003680
Stsc30642g00001 269 MobiDBLite consensus disorder prediction 1 21 - -
Stsc30642g00001 269 SUPERFAMILY AF0104/ALDC/Ptd012-like 80 212 - -
Stsc30642g00001 269 CDD DUF296 83 197 IPR005175 -
Stsc30642g00001 269 MobiDBLite consensus disorder prediction 1 77 - -
Stsc30642g00001 269 MobiDBLite consensus disorder prediction 211 237 - -
Stsc30642g00001 269 MobiDBLite consensus disorder prediction 29 47 - -
Stsc30642g00001 269 ProSiteProfiles PPC domain profile profile. 78 222 IPR005175 -
Stsc30642g00001 269 Gene3D - 82 214 - -
Stsc30642g00001 269 Pfam Plants and Prokaryotes Conserved (PCC) domain 83 198 IPR005175 -
Stsc30642g00001 269 FunFam AT-hook motif nuclear-localized protein 82 216 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30642g00001 Stsc-Chr30642 6392 7201 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30642g00001 44 268 AT-hook Motif Nuclear Localized (AHL) Family AT5G49700 61.638 1.83e-89 265
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30642g00001 - - gmx:100811053 328.561